Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30278
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 0.86
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.5
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 26 4.6
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 4.6
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 6.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.0
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr... 25 8.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.0
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
+D+++ E AEQ K+ LEEEL L+ + EH E ++ SL ++
Sbjct: 74 EDIQKTE--AEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERE 129
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 2 LVLMEQDLERAEERAEQSDCKIVELEEE---LRVVGNNLKSLEVSEEKAMASREHVEDKI 172
L L EQ+ E ++E ++ ++ ELEEE LR+ +N + E+ E +E+++
Sbjct: 36 LSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEEL 95
Query: 173 HS 178
+
Sbjct: 96 ET 97
>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 609 RQNTACLIRHLPSAIFFFKFDT 674
R+ T CLI+ +P +FFF F++
Sbjct: 41 RKQTGCLIKGIPLFLFFFFFES 62
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 68 VELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
+E EEE + NNLK+L S + +M S +V+ + + S L
Sbjct: 269 IEGEEEGECLFNNLKALIYSPDLSMDSSNYVQSVVQTSSSIL 310
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 306 AGGDGGHAPRHPEYVNTALPSLARSASPF 392
+GG GH P H +V + + A S S F
Sbjct: 50 SGGGAGHEPTHSSFVGKGMLTAAVSGSIF 78
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 137 PSPLRLPEISGCYQRHGAPPQAQRFCNRFVRRVPPPSLG 21
PSP+ LP S Y + PP + + + + P P+ G
Sbjct: 402 PSPMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQPAYG 440
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 378 SGLVRGARCSHILDVVERGL 319
+GL++ ++C HIL ++E GL
Sbjct: 395 AGLIKYSKCLHILPLIEVGL 414
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 256 DRLEDDLVAEREKSKLLQEEMEATLHDIQNM 348
++L+D + A E+++ LQE +E +D +N+
Sbjct: 332 EKLQDQIKALLERNQSLQEALETVKNDEKNL 362
>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 114
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 256 RLLLQFLHGTLGE--LGTCFSLSQFLREAVDLILDVLARRHRLLL*DFQRFQ 107
R + +HG L E +GT + + +E + ++ L +++ L +FQ+FQ
Sbjct: 53 RRCFRMIHGVLVERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQ 104
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 74 LEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKLQKE 253
LE+E + + LKSLE ++ E + ++ L+ KL + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 254 AIGLK 268
LK
Sbjct: 957 ISNLK 961
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,454
Number of Sequences: 5004
Number of extensions: 49007
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -