Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30278
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0) 68 9e-12
SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18) 36 0.032
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 35 0.074
SB_29416| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 32 0.52
SB_17358| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.2e-07) 31 0.69
SB_44693| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49) 30 2.1
SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08) 30 2.1
SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71) 30 2.1
SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15) 29 2.8
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034) 29 2.8
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 29 3.7
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) 29 4.9
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 28 6.5
SB_43768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_26792| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.15) 28 6.5
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 28 6.5
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 28 8.5
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4) 28 8.5
>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
Length = 442
Score = 67.7 bits (158), Expect = 9e-12
Identities = 32/88 (36%), Positives = 54/88 (61%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
+E +LE AE++A+ ++ ++ ELEEE+ +VGNNL+SLE+SE KA + E++I L K
Sbjct: 130 LENELEEAEQKADAAEARVKELEEEVTLVGNNLRSLEISEGKASEREDTYENQIRELETK 189
Query: 191 LXXXXXXXXXXXXSVQKLQKEAIGLKTI 274
L VQ+L+ +A ++ +
Sbjct: 190 LQDAEERAEKAEQKVQELEAQAEAMEAV 217
>SB_57673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 41.1 bits (92), Expect = 9e-04
Identities = 25/77 (32%), Positives = 36/77 (46%)
Frame = +2
Query: 20 DLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKLXX 199
D +RA+ER E++ +I LE +L G + LE +E A E+KI L +L
Sbjct: 397 DCDRAKERLEKAQERIESLEYDLHRAGETMVELEAKDEVASEREMEREEKIAFLQAELKK 456
Query: 200 XXXXXXXXXXSVQKLQK 250
VQKLQ+
Sbjct: 457 LVEREDIAEREVQKLQR 473
>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
Length = 495
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/84 (23%), Positives = 36/84 (42%)
Frame = +2
Query: 2 LVLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSL 181
L L +L + R + + ++ ELE L+V G +++ L +SEEK + +I L
Sbjct: 380 LTLTTSELHKIRARQREKEEEVRELENRLKVGGRSIQQLVISEEKYCDKEDEFRHRIRLL 439
Query: 182 SQKLXXXXXXXXXXXXSVQKLQKE 253
L +L++E
Sbjct: 440 KANLAATILRAEESERRCMRLERE 463
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 34.7 bits (76), Expect = 0.074
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
+D+ + + R + + KI EL++EL V L+ +EK + + + D+I+ L ++
Sbjct: 561 EDMAKEKTRRRELEKKIEELQDELDDVSTRRNELQKKQEKIIKENDELNDRINELKKE 618
>SB_29416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 2 LVLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSL 181
+V+ E +L + ER E++ I LE + N+ SLE + A VE+KI L
Sbjct: 128 IVVTETELSKVNERLERALETIERLEATIEEESTNMASLEQKDTDASQWEIEVEEKIGFL 187
Query: 182 SQKL 193
+++L
Sbjct: 188 NEQL 191
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVE 163
+E +E AEE E+ + + E E VG+ ++ +E EKA AS E +
Sbjct: 853 VEASIEEAEEPGEEVESLLKEAEAPEEEVGDQVEEVEAPVEKAAASVEEAK 903
>SB_58880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 20 DLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
+LE ++ Q +I +E+EL + NNLK E EKA+ ++ S+ K+
Sbjct: 304 NLESVIQKQTQRKSEIKSIEKELPDLKNNLKKAEADLEKAVQGEAKSSQELRSIRSKV 361
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
++ L++ EE +Q D I +L EEL+ + L+ ++++ R +ED + K
Sbjct: 948 LDATLKKVEEEGKQKDKNIEQLNEELQQQDEAIAKLQKAKKQVEDERTELEDHLQEEQNK 1007
Query: 191 L 193
+
Sbjct: 1008 V 1008
>SB_17358| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.2e-07)
Length = 227
Score = 31.5 bits (68), Expect = 0.69
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 394 RNGEAERASEGSAVFTYSGCRGAWPPSPPAGVCSFRARPPDRL-QAYRLLLQF 239
R+ A++ SE V Y GCR +P S P C ++ D L ++Y+ L F
Sbjct: 48 RDNIAKKLSEFVQVDVYGGCRRNFPKSTPGLSCPRNSKECDTLMRSYKFRLSF 100
>SB_44693| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 68 VELEEELRVVGNNLKSLEVSEEKA-MASREHVEDKIHSLSQKL 193
V L + GN +K+L E+ A+RE+V+DKI +L +L
Sbjct: 36 VSASAPLNMAGNAIKNLPFPNEQTDAANREYVDDKIDNLDDEL 78
>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/87 (18%), Positives = 40/87 (45%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
+E+ +E E R +C++ ELE + + + L+ + + + A AS+ + + +++
Sbjct: 298 LEKTVEARESRIRTLECRVDELERQKKKIKEELECVSFNTQAARASKSQLLREYDEHAKE 357
Query: 191 LXXXXXXXXXXXXSVQKLQKEAIGLKT 271
+ S++ Q + + L T
Sbjct: 358 MKRLEEELNKAKASLKDKQDQLLALDT 384
>SB_43929| Best HMM Match : TLE_N (HMM E-Value=0.49)
Length = 351
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 47 EQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVE 163
+QS+ K VELEE+ + L L+ +E +AS++ VE
Sbjct: 308 DQSEEKDVELEEQRELAETRLSELQKLKEDLVASQQEVE 346
>SB_25198| Best HMM Match : Tropomyosin (HMM E-Value=1.5e-08)
Length = 277
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 8 LMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQ 187
+++ +LE+A ER ++++ L + L+ LEV + A EDKI + +
Sbjct: 135 VVQGELEKAVERGDRAEMMCEHLMNDFTGTSEVLRDLEVKDAAASEREIDNEDKIEFIQE 194
Query: 188 KL 193
L
Sbjct: 195 NL 196
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +2
Query: 8 LMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKI 172
L+E + R +E +++ D ++ E+ + + N K+LEV++ ++ +ED +
Sbjct: 58 LIEAESRRVKELSQKKDHELEEMHKRSKEEENLCKTLEVTDRESDEKMRELEDAL 112
>SB_3306| Best HMM Match : DUF837 (HMM E-Value=0.71)
Length = 238
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 47 EQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVE 163
+QS+ K VELEE+ + L L+ +E +AS++ VE
Sbjct: 195 DQSEEKDVELEEQRELAETRLSELQKLKEDLVASQQEVE 233
>SB_12412| Best HMM Match : Kinesin (HMM E-Value=6.3e-15)
Length = 1001
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/56 (21%), Positives = 30/56 (53%)
Frame = +2
Query: 26 ERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
E+ +E E+ + ++ L ++ + ++ LE+++ K R E+K+ L+ K+
Sbjct: 631 EKEDEDEEKVEGELAALTTDIEIKQKLIEELEIAQNKIQTMRSQYEEKLVLLTHKI 686
>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
Length = 671
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +1
Query: 145 VSRARRG*DPQPLAEIGSS*STCRVRRAFRAETAKGGDRLEDDLVAEREKSKLLQEEMEA 324
+S ++RG D + A++ S A E + ++L DD+ +E++K L+EE +
Sbjct: 220 MSASQRGKDGEGGAKVCSDIDMLLKLTAKLQEASTTYEQLRDDMTKTKEENKKLREENDM 279
Query: 325 TLHDIQNM 348
L I M
Sbjct: 280 LLRQIARM 287
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
+DLE A++RAE+ I +EEL N+L LE+ + + ++ ++ +++L
Sbjct: 1257 RDLEAAKDRAEKEKQAI---KEELVQANNDLADLEIEHDTVQKDYDSLKKQLADANERL 1312
>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3259
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Frame = +2
Query: 23 LERAEERAEQSDCKIVELEEELRV-------VGNNLKSLEVSEEKAMASREHVEDKIHSL 181
LER + ++ K+ LEEELR+ + + ++ LE ++A A + +ED+I +L
Sbjct: 2321 LERITKESKDLKEKVTSLEEELRLSNKQSERLTSQVQRLERDLDEAAAQKSDMEDRIATL 2380
Query: 182 SQK 190
++
Sbjct: 2381 EKR 2383
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
++ ++ AE + + + +L +++ + + LE ++KA E ED+IH L KL
Sbjct: 1770 DEKVQDAENERDDMEHRNKQLRDDVVNFQSRITELEHKKKKADEKIEEQEDEIHELLDKL 1829
>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
Length = 1019
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -3
Query: 203 QLEPISARG-CGSYPRRA-----RETPSPSPLRLPEISGCYQRHGAPPQA 72
+L PI+ RG GSYP A R +P SP R+P +S R PP +
Sbjct: 291 KLTPIAPRGPSGSYPAGAPDVSHRGSPLGSPWRVPYLSYAGPRPDYPPSS 340
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIH 175
++ ++++ R + D ELE E + + + K+LE EK V DK+H
Sbjct: 245 LKSEVQQLNSRLQNQD----ELETERKTLKQDCKALESEGEKLRGELGRVRDKLH 295
>SB_43768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 385 EAERASEGSAVFTYSGCRGAWPPSPPAGVCSFRAR-PPDRLQAYRLLLQ 242
EAE S +A ++++ G PP+PP SFRA PD+L ++ L+
Sbjct: 85 EAEPGSHLAANYSFNVGLGLAPPTPPV---SFRAADTPDKLSSFHQSLR 130
>SB_26792| Best HMM Match : Herpes_BLRF2 (HMM E-Value=0.15)
Length = 221
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 385 EAERASEGSAVFTYSGCRGAWPPSPPAGVCSFRAR-PPDRLQAYRLLLQ 242
EAE S +A ++++ G PP+PP SFRA PD+L ++ L+
Sbjct: 169 EAEPGSHLAANYSFNVGLGLAPPTPPV---SFRAADTPDKLSSFHQSLR 214
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEK---AMASREHVEDKI 172
E++ + +E A ++ ++ ++EELR + +KSL+ + A H DKI
Sbjct: 3663 EEERRKLKEEANYANKELRSIQEELRTLKREMKSLKADASRKNDKTAELTHENDKI 3718
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 53 SDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
+D V + ++ V+G NL+SLEV E+ A+ E V + + K
Sbjct: 5626 TDTATVNINDDDAVIGFNLESLEVPEDIGTANVEVVRNGFTDVPHK 5671
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -3
Query: 173 GSYPRRARETPSPSPLRLPEISGCYQ---RHGAPPQAQRFCN 57
G Y +R PSP+ P SG YQ + APP A F N
Sbjct: 407 GPYMQRQNSYPSPANQNGPPNSGPYQYPSQPNAPPNASPFPN 448
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 23 LERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHV 160
+E A+ R ++ K+ E+E EL + + L+ ++ + A+ R+H+
Sbjct: 198 IELAKSRLDKE--KVTEMENELNELKHKLQQVQDERDMALVQRDHL 241
>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
Length = 269
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 8 LMEQDLERAEERAEQSDCKIVELEEELRVVGNN----LKSLEVSEEKAMASREHVEDKIH 175
++E+D + EER ++ +IV ++E R V K +E E++ R++V DKI
Sbjct: 33 ILERDNGKLEERCDELFEEIVRMKESQREVEEEQEKLFKDIETLEDENFYLRKYV-DKIQ 91
Query: 176 SLSQ 187
L +
Sbjct: 92 ELEE 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,625,329
Number of Sequences: 59808
Number of extensions: 382789
Number of successful extensions: 1319
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -