Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30278
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g40020.1 68417.m05666 hypothetical protein 36 0.035
At1g14680.1 68414.m01746 hypothetical protein 33 0.19
At5g45310.1 68418.m05562 expressed protein 31 0.75
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 30 1.3
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 30 1.3
At4g25070.1 68417.m03596 expressed protein ; expression supporte... 30 1.3
At5g53220.1 68418.m06616 expressed protein ; expression support... 30 1.7
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 29 2.3
At4g20880.1 68417.m03028 ethylene-responsive nuclear protein / e... 29 2.3
At3g54320.2 68416.m06004 ovule development protein, putative sim... 29 3.0
At3g54320.1 68416.m06003 ovule development protein, putative sim... 29 3.0
At1g67230.1 68414.m07652 expressed protein 29 3.0
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 29 4.0
At3g57780.1 68416.m06436 expressed protein 29 4.0
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 28 5.3
At1g32560.1 68414.m04018 late embryogenesis abundant group 1 dom... 28 5.3
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M... 28 7.0
At4g37060.1 68417.m05248 patatin, putative similar to patatin-li... 28 7.0
At3g30760.1 68416.m03926 hypothetical protein 28 7.0
At2g30500.1 68415.m03715 kinase interacting family protein simil... 28 7.0
At2g16485.1 68415.m01889 expressed protein ; expression supporte... 28 7.0
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1... 27 9.2
At4g31570.1 68417.m04483 expressed protein 27 9.2
At2g41460.1 68415.m05122 apurinic endonuclease-redox protein / D... 27 9.2
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 27 9.2
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 35.5 bits (78), Expect = 0.035
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKS---LEVSEEKAM 142
++ L +A E A+ S K+ EL EE++ V N LKS E++ EKAM
Sbjct: 134 KESLAQAHEAAQASSLKVSELLEEMKSVKNELKSATDAEMTNEKAM 179
>At1g14680.1 68414.m01746 hypothetical protein
Length = 290
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2
Query: 8 LMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAM 142
LME E +ERA +++ ++ ELEEE+R + + +KS SEE +
Sbjct: 112 LMEFGNE-TDERAREAESRVRELEEEVRKMSDEIKSRIESEEDCL 155
>At5g45310.1 68418.m05562 expressed protein
Length = 352
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 LMEQDLERAEERAEQSDCKIVELEEELR-VVGNNLKSLEVS 127
+MEQDL+ E+ +++ KI +LE EL+ + NL+ +EV+
Sbjct: 123 IMEQDLDELEDEHDEAISKIEKLEAELQELKEENLQLMEVN 163
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELE-EELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQ 187
M+Q+LER ++A ++ K ++ E ++LR N L+ + E+ S + E+KI +L Q
Sbjct: 200 MQQELERTRQQANEA-LKAMDAERQQLRSANNKLRD---TIEELRGSLQPKENKIETLQQ 255
Query: 188 KL 193
L
Sbjct: 256 SL 257
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELE-EELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQ 187
M+Q+LER ++A ++ K ++ E ++LR N L+ + E+ S + E+KI +L Q
Sbjct: 200 MQQELERTRQQANEA-LKAMDAERQQLRSANNKLRD---TIEELRGSLQPKENKIETLQQ 255
Query: 188 KL 193
L
Sbjct: 256 SL 257
>At4g25070.1 68417.m03596 expressed protein ; expression supported
by MPSS
Length = 765
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 23 LERAEERAEQSDCKIVELEEELRVVGNNLK-SLEVSEEKAMASREHVEDKIHSLSQKLXX 199
L+RAEER E ++ + ELE+++ +G +++ + K A R+ E + + QK
Sbjct: 424 LQRAEERREAAEARAKELEKQVASLGEGANFDVKLLKRKEAALRQR-EAALRAAEQKRDG 482
Query: 200 XXXXXXXXXXSVQKLQKEA 256
Q L+ EA
Sbjct: 483 RNRETNALSSEFQSLKDEA 501
>At5g53220.1 68418.m06616 expressed protein ; expression supported
by MPSS
Length = 441
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 11 MEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKI 172
+E +L++ E + K ELE E VV ++L+ SEE + V+D I
Sbjct: 29 LETELQKRNNEFESLELKFKELESEKLVVEEESRNLKESEEGSPCMTTPVKDYI 82
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
++L++ E E+ + L+ ELR K E + K +HV+ KI L KL
Sbjct: 302 EELKKFESVHEKHKKRQEVLDNELRACKEKFKEFERQDVKHREDLKHVKQKIKKLEDKL 360
>At4g20880.1 68417.m03028 ethylene-responsive nuclear protein /
ethylene-regulated nuclear protein (ERT2) identical to
ethylene-regulated nuclear protein [Arabidopsis
thaliana] gi|2765442|emb|CAA75349
Length = 405
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 256 DRLEDDLVAEREKSKLLQEEMEATLHDIQN 345
D L D L+ +R K KL +EE + HD +N
Sbjct: 188 DSLIDKLIGKRHKEKLEEEEESTSTHDRRN 217
>At3g54320.2 68416.m06004 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 356
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSE 130
+++ E+ EE+AEQ + +IV EE VV + S + E
Sbjct: 209 QEEEEKEEEKAEQQEAEIVGYSEEAAVVNCCIDSSTIME 247
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSE 130
+++ E+ EE+AEQ + +IV EE VV + S + E
Sbjct: 280 QEEEEKEEEKAEQQEAEIVGYSEEAAVVNCCIDSSTIME 318
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +2
Query: 68 VELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
+E+E++ + + ++LKS EK A +H+E+K+ Q L
Sbjct: 358 LEMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAKREQAL 399
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +2
Query: 32 AEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKLXXXXXX 211
A + + K ELEE+L +S VS E M E DK+H ++
Sbjct: 315 AHSLSNEWQSKAKELEEQLEEANKLERSASVSLESVMKQLEGSNDKLHDTETEITDLKER 374
Query: 212 XXXXXXSVQKLQKE 253
+V K QKE
Sbjct: 375 IVTLETTVAK-QKE 387
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/59 (18%), Positives = 35/59 (59%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQK 190
++DLE +E+R + ++ + E+E+ + + L++++ + +A+ + ++ LS++
Sbjct: 386 KEDLEVSEQRLGSVEEEVSKNEKEVEKLKSELETVKEEKNRALKKEQDATSRVQRLSEE 444
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 32/60 (53%)
Frame = +2
Query: 14 EQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
E+D E ++ E + ++ +LEEELR V +LE+S + K+H+ ++++
Sbjct: 158 EEDEEMLKQMVETLETRVEKLEEELREVA----ALEISLYSVVPDHSSSAHKLHTPARRI 213
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator of
chromosome condensation (RCC1) family protein similar to
zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKL 193
QD+ +E+ EQ K +LEEEL LK + ++ I SL+ +L
Sbjct: 844 QDMAGLKEQVEQLASKAHQLEEELEKTKRQLKVVTAMAADEAEENRSAKEVIRSLTTQL 902
>At1g32560.1 68414.m04018 late embryogenesis abundant group 1
domain-containing protein / LEA group 1
domain-containing protein contains Pfam domain, PF03760:
Late embryogenesis abundant (LEA) group 1
Length = 134
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 29 RAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKI 172
+A+E+AE++ + E E+E+ K E + + MA H EDK+
Sbjct: 25 KADEKAERAMARTKE-EKEIAHQRRKAKEAEANMDMHMAKAAHAEDKL 71
>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
Myosin heavy chain, non-muscle (Zipper protein) (Myosin
II)(SP:Q99323) {Drosophila melanogaster}
Length = 761
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +2
Query: 65 IVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKLXXXXXXXXXXXXSVQKL 244
+++ E+E+ +N SLE + +R+ +ED++ +LS +L K+
Sbjct: 475 LLDREKEVMTWKDNYSSLESDLRSSNDARQKLEDQLDNLSSELMKSNGELQDQYQRYDKI 534
Query: 245 QKE 253
Q+E
Sbjct: 535 QEE 537
>At4g37060.1 68417.m05248 patatin, putative similar to patatin-like
latex allergen [Hevea brasiliensis][PMID:10589016];
contains patatin domain PF01734
Length = 414
Score = 27.9 bits (59), Expect = 7.0
Identities = 30/117 (25%), Positives = 46/117 (39%)
Frame = -1
Query: 391 NGEAERASEGSAVFTYSGCRGAWPPSPPAGVCSFRARPPDRLQAYRLLLQFLHGTLGELG 212
NG A++ F C +P P GV + + P L + +L TLG+L
Sbjct: 81 NGRPRFAAKEIVPFYLEHCPKIFPQ--PTGVLALLPKLPKLLSGPKYSGNYLRTTLGKLL 138
Query: 211 TCFSLSQFLREAVDLILDVLARRHRLLL*DFQRFQVVTNDTELLLKLNDFAIALFGA 41
L Q L V D+ + + F +Q +T D L +K++D I A
Sbjct: 139 GETKLRQTLTNVVIPTFDIKTLQPTI----FSSYQALT-DPSLDVKVSDICIGTSAA 190
>At3g30760.1 68416.m03926 hypothetical protein
Length = 133
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +2
Query: 5 VLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVS 127
++M++DLE A +R E KI +E++ ++ N + EVS
Sbjct: 75 IVMKKDLEAANKRVEAQAEKIFFMEKKFEMLEMNYELEEVS 115
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 20 DLERAEERAEQSDCKIVELEEELRVVGNNLKSLE---VSEEKAMASREHVEDKIHSLSQK 190
DL++ + + + K++ LEEEL + L+ E S + + + E+K+ SL +
Sbjct: 247 DLDKEDTKEDAVATKVLALEEELSIAKEKLQHFEKETYSLKNELEIGKAAEEKLKSLQHE 306
Query: 191 LXXXXXXXXXXXXSVQKLQKEAIGLK 268
L + +KE + L+
Sbjct: 307 LELAQRDADTYINKLNAEKKEVLKLQ 332
>At2g16485.1 68415.m01889 expressed protein ; expression supported
by MPSS
Length = 617
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 250 GGDRLEDDLVAEREKSKLLQEEMEATLHDIQN 345
GG+ +E DL +++EK +++EE A + N
Sbjct: 195 GGEEIESDLESKKEKVDVIEEETTAQAASLVN 226
>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P14714
Phytochrome C {Arabidopsis thaliana}
Length = 1111
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 5 VLMEQDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVED 166
V+ + D+E EE + DC L+E L V + L + E K S ++ ++
Sbjct: 934 VISDSDIEGIEEGYVELDCSEFGLQESLEAVVKQVMELSI-ERKVQISCDYPQE 986
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/79 (25%), Positives = 37/79 (46%)
Frame = +2
Query: 17 QDLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHSLSQKLX 196
Q L+ E + E ++ ELE+E++ K+L++ +KA ASR + K+ K
Sbjct: 2387 QALDEEESQMEDLKLRVTELEQEVQQ-----KNLDL--QKAEASRGKISKKLSITVDKFD 2439
Query: 197 XXXXXXXXXXXSVQKLQKE 253
++KLQ++
Sbjct: 2440 ELHHLSENLLAEIEKLQQQ 2458
>At2g41460.1 68415.m05122 apurinic endonuclease-redox protein /
DNA-(apurinic or apyrimidinic site) lyase identical to
apurinic endonuclease-redox protein SP: P45951 from
[Arabidopsis thaliana]
Length = 536
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 20 DLERAEERAEQSDCKIVELEEELRVVGNNLKSLEVSEEKAMASREHVEDKIHS 178
D+E E+R +QS K ++ + + + KSL + ++ + S+E I S
Sbjct: 174 DIEHGEKRVKQSTEKNLKAKVSAKAIAKEQKSLMRTGKQQIQSKEETSSTISS 226
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 59 CKIVELEEELRVVGNNLKSLEVSE 130
CK+++L + +R++ NNL + E E
Sbjct: 1374 CKVLKLTKNMRLLANNLSATEAKE 1397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,910,947
Number of Sequences: 28952
Number of extensions: 288144
Number of successful extensions: 934
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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