Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30276
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 46 2e-05
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 45 5e-05
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 43 2e-04
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 42 3e-04
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 40 0.001
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 37 0.013
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 36 0.023
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 36 0.030
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 35 0.052
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 30 1.1
At4g39690.1 68417.m05616 expressed protein 30 1.5
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 29 2.0
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 29 2.6
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 29 2.6
At4g32960.1 68417.m04689 expressed protein 29 2.6
At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PH... 28 4.5
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 28 6.0
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 27 7.9
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 65 CVKCNKIITQGG-VTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAKR 241
C CN I G + N WH ECF C C+ ++ F++ P+ C+ E + +
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 242 CTSCT 256
C C+
Sbjct: 232 CDVCS 236
Score = 30.7 bits (66), Expect = 0.85
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +1
Query: 271 IGGTRFISFEDRHWHNDCFICAQCKTSLVGKGFITDGQDIICPECAKQK 417
IG RF++ + WH +CF C C + F T G C +++
Sbjct: 179 IGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRER 227
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 232
+C C+K + +T + P+H+ CF C++CN +L ++S D YC F +LF
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C C K + +T + E +H+ CF C + L + + D YC F +LF +
Sbjct: 106 KCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLE 165
Query: 239 R 241
+
Sbjct: 166 K 166
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 232
+C C+K + +T + +H+ CF CT+C +L ++S D YC F +LF
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C C K + VT + E +H+ CF CT+ L + S + YC F +LF +
Sbjct: 105 KCATCKKTVYPLEKVTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLE 164
Query: 239 R 241
+
Sbjct: 165 K 165
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 232
+C C+K + ++ + P+H+ CF CT+C +L ++S D YC F +LF
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C C K + + + E +H+ CF C + +L + S D YC F +LF +
Sbjct: 103 KCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFME 162
Query: 239 R 241
+
Sbjct: 163 K 163
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 122 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAKRCTSC 253
WH ECF C C+ + F+ +PY C+ E +C C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 36.7 bits (81), Expect = 0.013
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C C+K + VT +++ +H+ CF C++ ++ + + + YC F +LF +
Sbjct: 107 KCATCSKTVYPIEKVTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 166
Query: 239 R 241
+
Sbjct: 167 K 167
Score = 35.1 bits (77), Expect = 0.040
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 122 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 232
+H+ CF CT+C + L ++S + YC F +LF
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF 66
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 62 RCVKCNKII-TQGGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C+ C+K + +T N +H+ CF C +C +L + S + YC F + F +
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNFKR 68
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYC 208
+CV C+K + V+ +H+ CF CT+ +++ + + + K YC
Sbjct: 109 KCVGCDKTVYPIEKVSVNGTLYHKSCFKCTHGGCTISPSNYIAHEGKLYC 158
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 62 RCVKCNKIITQ-GGVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFAK 238
+C C K + VT +++ +H+ CF C++ ++ + + + YC F +LF +
Sbjct: 108 KCATCTKTVYPIEKVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKE 167
Query: 239 R 241
+
Sbjct: 168 K 168
Score = 33.9 bits (74), Expect = 0.092
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 122 WHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELF 232
+H+ CF C++C + L ++S + YC F +LF
Sbjct: 30 YHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF 66
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Frame = +2
Query: 59 TRCVKCNKIITQG-GVTYKNEPWHRECFTCTNCNTSLAGQRFTSRDEKPYCAECFGELFA 235
++C C I G + WH +CF C C +A + Y C+ EL
Sbjct: 1238 SKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDL-RGMYHKPCYKELRH 1296
Query: 236 KRCTSC 253
C C
Sbjct: 1297 PNCYVC 1302
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 65 CVKCNKIITQG-GVTYKNEPWHRECFTCTNCNTSLAGQRFTSRD--EKPYCAECFGEL-F 232
C C I G V WH ECF C C+ +A + ++ YC F E+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP--FHEVDG 258
Query: 233 AKRCTSC 253
+C SC
Sbjct: 259 TPKCCSC 265
>At4g39690.1 68417.m05616 expressed protein
Length = 650
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -1
Query: 450 SVEARQVY-LHELLLGALGTDDVLSVG 373
S EARQ + +H+L LGAL DD LS G
Sbjct: 465 SEEARQSHSVHKLALGALALDDTLSKG 491
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 65 CVKCNKIITQGG-VTYKNEPWHRECFTCTNCNTSLA 169
C CN + GG V WH CF C C+ +A
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 321
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 530 VCSLHITKHLSYINCIACEGWSDARAEALK 441
+C L L+YI+C CE W A LK
Sbjct: 1110 ICLLPYNPGLTYIHCTKCEKWFHTEAVKLK 1139
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 530 VCSLHITKHLSYINCIACEGWSDARAEALK 441
+C L L+YI+C CE W A LK
Sbjct: 1110 ICLLPYNPGLTYIHCTKCEKWFHTEAVKLK 1139
>At4g32960.1 68417.m04689 expressed protein
Length = 264
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 262 ITGIGGTRFISFEDRHWHNDCFIC--AQCKTSLVGKGFITDGQDIICPECAKQKLM 423
+TG+G TR+ R D IC ++ + K T+G+ +I EC KQ ++
Sbjct: 8 VTGVGTTRYALKPGRIKSEDILICIDVDAESMVEMKTTGTNGRPLIRMECVKQAII 63
>At2g47590.1 68415.m05938 photolyase/blue light photoreceptor (PHR2)
identical to photolyase/blue light photoreceptor PHR2
[Arabidopsis thaliana] GI:3319288; contains Pfam domain,
PF00875: deoxyribodipyrimidine photolyase
Length = 447
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 426 NTPVSLQRFRSRIAPSLTRNTIYI*QMFCDVQRTYHTTGSSLTPENG 566
N V F +I+P L +I MF ++++T + +S TP NG
Sbjct: 355 NNSVFGANFSCKISPWLAMGSISPRSMFDELKKTISASTTSTTPRNG 401
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 530 VCSLHITKHLSYINCIACEGWSDARAEALKRDR 432
+C L L+YI+C +C+ W A L+ +
Sbjct: 1247 ICKLPYNPGLTYIHCTSCDMWYHIEAVKLEESK 1279
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +3
Query: 414 EAHVNTPVSLQRFRSRIAPSLTRNTIYI*QMFCDVQRTYHTTGSSLTPENGARSESRTP 590
E N PV + L+R+ + ++ V YH + S L+P R S TP
Sbjct: 7 EQEENDPVEKTKSLISALNYLSRDLLLPSHLYASVSSIYHASVSDLSPSPPLRGNSYTP 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,849,934
Number of Sequences: 28952
Number of extensions: 227312
Number of successful extensions: 777
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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