Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30274
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     27   0.20 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    27   0.20 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           27   0.20 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    27   0.20 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   1.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.9  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.3  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   3.3  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   4.4  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   5.8  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   5.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   7.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   7.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   7.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   7.6  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 QPDSMATITMKPEYPPSEVYS-TSEPPP 188
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 QPDSMATITMKPEYPPSEVYS-TSEPPP 188
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 QPDSMATITMKPEYPPSEVYS-TSEPPP 188
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 108 QPDSMATITMKPEYPPSEVYS-TSEPPP 188
           QP  ++ + + P++PPSE Y+  S  PP
Sbjct: 18  QPQHISGVVVDPKFPPSEEYNQNSYIPP 45


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 187 GGGSDVLYTSEGGYSGFIVIVAI--ESGW 107
           G G+   YT E G  G+  IV +  E GW
Sbjct: 283 GAGNSGKYTGEAGMLGYNEIVELQKEGGW 311


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 102  EHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPPSSWEPLY 281
            E  P   A    + E PPS   ST  PPP  +H  + S+   K +   VV   ++W    
Sbjct: 1780 EEPPSVEAVEEEREEAPPSVHSSTVVPPP--QHSTTQSLVDPK-SEFKVVCYFTNWA--- 1833

Query: 282  WLRVG 296
            W R G
Sbjct: 1834 WYRQG 1838


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 335 DAMLDQELALEGRAYGNDALVADEPLPTSKCPR 433
           D  L Q+L  E   + +  L +DE L   KCP+
Sbjct: 7   DQDLVQDLIEEPATFSDAVLSSDEELFHQKCPK 39


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 217 TEVDTLCR*AGGGSDVLYTSEGGYSGFIVI 128
           T+ D     +GGG+   YT+E G+  F  I
Sbjct: 773 TQFDIGAPASGGGTPGKYTAEAGFMSFYEI 802



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 190 AGGGSDVLYTSEGGYSGF 137
           +GGG +  YT E G+  +
Sbjct: 353 SGGGKEGTYTKESGFLAY 370


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 706 PTHQVKLNRQFEHRSNRFKFVVLFSRTVG 620
           P H V++N        R+ FV+   +T G
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINADQTPG 404


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 706 PTHQVKLNRQFEHRSNRFKFVVLFSRTVG 620
           P H V++N        R+ FV+   +T G
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINADQTPG 404


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +3

Query: 120 MATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAA 239
           + T+    E PP   Y   EPP  Y  R        K+ A
Sbjct: 11  LPTVLPHQEVPPPFGYYHEEPPLFYEERPDFVAPYIKVEA 50


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 42  LPRDEQ*INFDKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEP 182
           +P D+  + F   Y +V+ KEH  + + TI  +   P   +Y   +P
Sbjct: 29  VPTDKPFLFFGSFYNLVIRKEHIFERIRTIYNQFSTPYVGIYIFHQP 75


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 96  PSRPNTVYQNLFIARLWVT 40
           PSR NT+  +L IA L VT
Sbjct: 85  PSRINTMLMHLAIADLLVT 103


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 96  PSRPNTVYQNLFIARLWVT 40
           PSR NT+  +L IA L VT
Sbjct: 85  PSRINTMLMHLAIADLLVT 103


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 181 GSDVLYTSEGGYSGF 137
           G  VLYT   GY GF
Sbjct: 481 GDAVLYTIHMGYHGF 495


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 454 MGGTPCKAWAFASWQRLIRYQGIISVGSAFQ 362
           +GG       +  +  +I +Q  +S+G+AFQ
Sbjct: 244 LGGEAISKHEYTGFGTVIEFQYGLSLGNAFQ 274


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 454 MGGTPCKAWAFASWQRLIRYQGIISVGSAFQ 362
           +GG       +  +  +I +Q  +S+G+AFQ
Sbjct: 245 LGGEAISKHEYTGFGTVIEFQYGLSLGNAFQ 275


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 454 MGGTPCKAWAFASWQRLIRYQGIISVGSAFQ 362
           +GG       +  +  +I +Q  +S+G+AFQ
Sbjct: 245 LGGEAISKHEYTGFGTVIEFQYGLSLGNAFQ 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,191
Number of Sequences: 336
Number of extensions: 3455
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)