Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30274
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 3.7
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 29 4.9
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 4.9
12_02_1197 + 26915933-26916298 28 6.5
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 6.5
11_01_0446 + 3462820-3464265 28 8.6
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 8.6
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 28 8.6
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 8.6
01_06_1341 - 36434098-36436080 28 8.6
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 135 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 221
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 105 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 215
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 549 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSL 692
T T + ++ +R+T R MR+L+ + + + L RC CL L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKL 377
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +3
Query: 87 VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPP--PAYRHRVSTSVQIAKIAALTVVAPP 260
+ + H+ + TI + P P V++ PP P HR ST+ Q APP
Sbjct: 294 IFLNDSHETEEELTIVVGPARP-DWVFTYRTPPANPRLTHRCSTTTQPLPTCGTPAPAPP 352
Query: 261 S 263
+
Sbjct: 353 A 353
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 184 GGSDVLYTSEGGYSGFIVIVAIESGW 107
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 128 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 48
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>11_01_0446 + 3462820-3464265
Length = 481
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/82 (23%), Positives = 34/82 (41%)
Frame = -3
Query: 463 EDSMGGTPCKAWAFASWQRLIRYQGIISVGSAFQSEFLVEHCIQLL*LMA**TSCYPTRS 284
+ + G + W A+ L+ + S+G F S+ + +QLL ++ Y
Sbjct: 23 DSTTGAASVEFWVAAATTLLLIKFAVDSIGPRFSSQKYINPAVQLLRILNHYAVSYTLGL 82
Query: 283 QYKGSQDEGGATTVSAAIFAIW 218
S +G TV+ A F +W
Sbjct: 83 MPPSSSHQG---TVANAFFKVW 101
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -2
Query: 170 AVYF-RRRIFRLHSYCSHRVWLV 105
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 224 REDCSTNSGRSSFILGTFILASSWVAA 304
R CS + GR +L ++A SWVAA
Sbjct: 2 RRRCSGSHGRQLLLLYWLVIACSWVAA 28
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 320 QLEQLDAMLDQELALEGRAYGNDALVADEPLPTSK 424
++EQ++ L +++ E YGN LV DE LP +
Sbjct: 127 RVEQMEFRLKEDILQEASRYGNKILVTDE-LPNGQ 160
>01_06_1341 - 36434098-36436080
Length = 660
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 141 PEYPPSEVYSTSEPP--PAYRHRVSTSVQIAKIAALTVVAPPSS 266
P PP+ ++ S P P R RVS S +A +A+ PP++
Sbjct: 6 PASPPASLFHLSRPAAGPRARPRVSRSRCVASLASQPPTPPPAN 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,658,407
Number of Sequences: 37544
Number of extensions: 427345
Number of successful extensions: 1382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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