Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30274
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               29   3.8  
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)               29   3.8  
SB_20868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)                 29   5.0  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     28   6.7  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   6.7  
SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   8.8  

>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1291

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 180 PPPAYRHRVSTSVQIAKIAALTVVAPPSSWEPLYWLR 290
           P P   H +   V + ++ ALT+  PP +   ++W R
Sbjct: 688 PEPVCDHLLQRRVCVERLHALTMSLPPKTHNTMHWFR 724


>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 111 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 209
           PD  AT  + PEY   +     +PPP Y   ++
Sbjct: 28  PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60


>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
          Length = 1079

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 108 QPDSM-ATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAK-IAALTVVAPPSSWEP 275
           +P S+ A+I+ KP    + V  T+ P P      S SV +A  + A +VVA P S EP
Sbjct: 151 EPSSVVASISFKPSAAGASV-PTAPPVPVVSATFSPSVVVASALVAPSVVASPISSEP 207


>SB_20868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 159 EVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPPSSW 269
           ++YST+EP  A+  R+S  + I   +   +  PP S+
Sbjct: 57  DIYSTNEPQGAFHQRISFCLDIYNQSVKAMRFPPKSY 93


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 99  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 221
           + H P S  + T +P  PP    +T++ PPAY  R S ++Q
Sbjct: 91  RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130


>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
          Length = 380

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -3

Query: 589 VILIVVNFLQFVFVYFGLGMVECVVFERLGREDDGWLVSGNTEDSMGG 446
           V +I  N +   FVY G        F R+ R DDG+  +G   D   G
Sbjct: 313 VCMIYTNAVINAFVYAGFNSEFRRTFRRIYRRDDGFSSNGGNRDRRRG 360


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -2

Query: 413 AKAHPLPGHHFRRLCLPKRVLGRALHPAALADGM---MNELLPNSKPI 279
           A+ H LP H  +     K  LGR L+  +L  G+   ++++LPN K +
Sbjct: 533 ARRHELPKHITKVTISEKTRLGRKLYKCSLMKGVKRQVSDVLPNIKSV 580


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 528 LSASSLKDWVVKMTAGSSQVTLKTAWAVLHAKRGHLLVGKGSSATRAS 385
           ++ S LKD    + A ++   + T  A+  A RGHLLV    +A  AS
Sbjct: 516 MAGSGLKDVFELIYAKNAVTHMLTGKAISRAIRGHLLVNSALNAMLAS 563


>SB_47826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 141 PEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPP-SSWEP 275
           P Y  +E   T EPPPAY  R    + +       + A P S+W P
Sbjct: 181 PSYNDTE---TQEPPPAYTPREGALIDVEDSEPRPLPARPYSAWNP 223


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 87  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 227
           V++  +  P    +I  +PE P + ++S   PP     +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,726,752
Number of Sequences: 59808
Number of extensions: 445655
Number of successful extensions: 1287
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)