Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30274
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein do...    32   1.8  
AK091465-1|BAC03668.1|  816|Homo sapiens protein ( Homo sapiens ...    32   1.8  
AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.     32   1.8  
BC133012-1|AAI33013.1|  135|Homo sapiens FLJ40142 protein protein.     32   2.4  
BC133010-1|AAI33011.1|  135|Homo sapiens FLJ40142 protein protein.     32   2.4  
AK097461-1|BAC05063.1|  135|Homo sapiens protein ( Homo sapiens ...    32   2.4  

>BC001460-1|AAH01460.2| 1019|Homo sapiens La ribonucleoprotein
           domain family, member 1 protein.
          Length = 1019

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 129 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQI--AKIAALTVVAPPS-SWEP 275
           I MKPE P  ++ S    PP  RH  +   +I  ++ A    VAPP+ +W+P
Sbjct: 180 IDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQP 231


>AK091465-1|BAC03668.1|  816|Homo sapiens protein ( Homo sapiens
           cDNA FLJ34146 fis, clone FCBBF3011889, weakly similar to
           Drosophila melanogaster La related protein (larp) mRNA.
           ).
          Length = 816

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 129 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQI--AKIAALTVVAPPS-SWEP 275
           I MKPE P  ++ S    PP  RH  +   +I  ++ A    VAPP+ +W+P
Sbjct: 257 IDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQP 308


>AB018274-1|BAA34451.1| 1096|Homo sapiens KIAA0731 protein protein.
          Length = 1096

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +3

Query: 129 ITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQI--AKIAALTVVAPPS-SWEP 275
           I MKPE P  ++ S    PP  RH  +   +I  ++ A    VAPP+ +W+P
Sbjct: 257 IDMKPEVPREKLASRPTRPPEPRHIPANRGEIKGSESATYVPVAPPTPAWQP 308


>BC133012-1|AAI33013.1|  135|Homo sapiens FLJ40142 protein protein.
          Length = 135

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 427 PTLCMEYRPCCLQCYLRRASRHLHDPVFQRRRTQPCR 537
           P  C++   CCL C L +ASR +H  V    R + C+
Sbjct: 31  PDGCVQSWRCCLPCDLGQASRFIHTTVCSAIRWRSCK 67


>BC133010-1|AAI33011.1|  135|Homo sapiens FLJ40142 protein protein.
          Length = 135

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 427 PTLCMEYRPCCLQCYLRRASRHLHDPVFQRRRTQPCR 537
           P  C++   CCL C L +ASR +H  V    R + C+
Sbjct: 31  PDGCVQSWRCCLPCDLGQASRFIHTTVCSAIRWRSCK 67


>AK097461-1|BAC05063.1|  135|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40142 fis, clone TESTI2012922. ).
          Length = 135

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 427 PTLCMEYRPCCLQCYLRRASRHLHDPVFQRRRTQPCR 537
           P  C++   CCL C L +ASR +H  V    R + C+
Sbjct: 31  PDGCVQSWRCCLPCDLGQASRFIHTTVCSAIRWRSCK 67


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,591,989
Number of Sequences: 237096
Number of extensions: 2175828
Number of successful extensions: 5499
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5497
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)