Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30274
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    29   3.4  
U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical pr...    29   4.4  
L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase prot...    28   5.9  

>Z99277-7|CAI79256.1|  271|Caenorhabditis elegans Hypothetical
           protein Y53C12A.8 protein.
          Length = 271

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 DREDCSTNSGRSSFILGTFILASSWVAARS-SCHQLEQLDAMLDQEL 358
           +R+DCST S  S+     F+L SS   +R+ SC Q   LD     EL
Sbjct: 65  NRQDCSTCSIDSTDESDIFVLDSSETRSRAGSCQQESSLDGSAVSEL 111


>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 87  VVMEKEHQPDSMATITMKPEY--PPSEVYSTSEPPPAYRHRVSTSV 218
           +V++K   P ++AT T KP    PP      SEPPPA++    +S+
Sbjct: 275 IVVKKLQAPIALATSTPKPAMCRPPKH----SEPPPAFQDSFVSSI 316


>U00049-7|AAC47054.1|  582|Caenorhabditis elegans Hypothetical
           protein C18F10.7a protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 529 VECVVFERLGREDDGWLVSGNTEDSMGGTPCK 434
           VE + FER  R    W  SG T +++ G  CK
Sbjct: 237 VENIGFERTSRGFLSWFSSGETNETVDGYDCK 268


>L23649-3|AAA27909.2|  601|Caenorhabditis elegans Tyrosinase protein
           1 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 79  CLSKFIYCSSLGNAHCV*CSKLKCG 5
           C S++++C + GN HCV  +K+K G
Sbjct: 393 CGSQYLFCDTRGNPHCV--AKVKPG 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,924
Number of Sequences: 27780
Number of extensions: 332042
Number of successful extensions: 1068
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)