Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30274
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.72 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.7  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 26/112 (23%), Positives = 43/112 (38%)
 Frame = +3

Query: 111 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPPSSWEPLYWLR 290
           PD M T+T +P+   S+   T+        R      + K+  L  + P +S      L 
Sbjct: 31  PDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRHTTLGL- 89

Query: 291 VG*QLVHHAIS*SSWMQCSTKNSLWKAEPTEMMPW*RMSLCQLANAHALHGV 446
               L        S  +   K+++ K + +    + R  L QL N   LHG+
Sbjct: 90  ----LTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGL 137


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 643 VLFSRTVGLRTLITRVW*VILIVVNFLQFVFVY 545
           V F RTV   +  T VW  +L   N+++ +F++
Sbjct: 142 VSFLRTVPPYSHQTDVWVELLKHFNYMKVIFIH 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,161
Number of Sequences: 438
Number of extensions: 4057
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)