Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30273
         (573 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.8  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   6.6  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   6.6  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   6.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   8.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 456 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 364
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 456 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 364
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 408 GCKHRAEGRC 379
           GC  R EGRC
Sbjct: 132 GCGERTEGRC 141


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 408 GCKHRAEGRC 379
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 408 GCKHRAEGRC 379
           GC  R EGRC
Sbjct: 137 GCGERTEGRC 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 370 AFSMSLAMES-GINLFTTSLSSELVTSRVM 284
           A S+S   E  G +L  T+LSS LV SRV+
Sbjct: 599 ASSVSAGEEGLGNSLAITALSSILVLSRVI 628


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 551 KHSLEREARSPPAVRLVSGFPLASTAFAVKFHQ 453
           +HS    + SP A    S +P  S A A   HQ
Sbjct: 70  QHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQ 102


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +1

Query: 37  EYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANID 150
           +Y++  N+    +GM +  DK+   + +W+  + +N++
Sbjct: 45  DYIEENNMP---NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 166 HRLSSHQCWLR*ES 125
           H LS H+C++R E+
Sbjct: 554 HNLSLHKCFMRVEN 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,351
Number of Sequences: 438
Number of extensions: 3287
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)