Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30272
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 100 1e-22
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 99 5e-22
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.1
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.1
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 2.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 2.6
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 2.6
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.4
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 6.0
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 6.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.9
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 100 bits (240), Expect = 1e-22
Identities = 45/90 (50%), Positives = 65/90 (72%)
Frame = +1
Query: 4 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 183
E SFRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137
Query: 184 FCIGFTNKDSLSQRKTCYAQHTQVEQSERK 273
F IGFT++ +KT YAQ +Q+ +K
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQK 167
Score = 77.0 bits (181), Expect = 2e-15
Identities = 34/71 (47%), Positives = 50/71 (70%)
Frame = +3
Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
RAI +KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P
Sbjct: 162 RAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221
Query: 435 RFEISKLMELH 467
+ + KL+ELH
Sbjct: 222 KHDAQKLLELH 232
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 98.7 bits (235), Expect = 5e-22
Identities = 44/90 (48%), Positives = 65/90 (72%)
Frame = +1
Query: 4 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 183
E +FRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RV
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137
Query: 184 FCIGFTNKDSLSQRKTCYAQHTQVEQSERK 273
F IGFT + + +KT YAQ +Q+ +K
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQK 167
Score = 79.0 bits (186), Expect = 5e-16
Identities = 34/71 (47%), Positives = 53/71 (74%)
Frame = +3
Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
RAIR+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P
Sbjct: 162 RAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221
Query: 435 RFEISKLMELH 467
+ + KL+ELH
Sbjct: 222 KHDAQKLLELH 232
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.1
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 459 PSTSRSRNGASSTLSPFGCKHRAE 388
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 279 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 410
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 2.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 554 IKHSLEREARSPPAVRLVSGFPLASTAFAVKFHQLR 447
I SL+R PP +RLV+ F L T++ + H +R
Sbjct: 681 IADSLQRNIAIPPILRLVA-FGLFITSYIIPSHHIR 715
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 31 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 162
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 186 LHWFHQ*GLLEPTQDVLRPAHSGRAIR--KKMCEIITRDVTNSELREVVNKL 335
LHW+ L+ +Q + P H+G+ + ++ E + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 126 LPFFNHPPELIGCEVHAVEVAEHITS 49
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 3.4
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +1
Query: 103 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVEQSERKCVK 282
++ W L+ T GYV+R GFT+ ++ + K +A + ER +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFAD-KDTKLYERALQQ 853
Query: 283 SLHATS 300
SL S
Sbjct: 854 SLDTIS 859
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 392 ARCLHPKGESVEEAPFRDLEVD 457
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 82 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 180
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 105 PELIGCEVHAVEVAEHITSL 46
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,920
Number of Sequences: 5004
Number of extensions: 46701
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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