Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30272
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 128 4e-30
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 126 1e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 125 2e-29
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 2.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 4.6
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 8.0
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 128 bits (308), Expect = 4e-30
Identities = 58/93 (62%), Positives = 74/93 (79%)
Frame = +1
Query: 4 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 183
++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+
Sbjct: 78 DQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRL 137
Query: 184 FCIGFTNKDSLSQRKTCYAQHTQVEQSERKCVK 282
FCIGFT + ++TCYAQ +Q+ Q RK V+
Sbjct: 138 FCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/71 (50%), Positives = 55/71 (77%)
Frame = +3
Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 162 RQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Query: 435 RFEISKLMELH 467
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 126 bits (304), Expect = 1e-29
Identities = 58/93 (62%), Positives = 73/93 (78%)
Frame = +1
Query: 4 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 183
++++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+
Sbjct: 78 DQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRL 137
Query: 184 FCIGFTNKDSLSQRKTCYAQHTQVEQSERKCVK 282
FCIGFT + ++TCYAQ +Q+ Q RK V+
Sbjct: 138 FCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/71 (50%), Positives = 54/71 (76%)
Frame = +3
Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P
Sbjct: 162 RQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAP 221
Query: 435 RFEISKLMELH 467
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 125 bits (302), Expect = 2e-29
Identities = 57/93 (61%), Positives = 73/93 (78%)
Frame = +1
Query: 4 ERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 183
++++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+
Sbjct: 78 DQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRL 137
Query: 184 FCIGFTNKDSLSQRKTCYAQHTQVEQSERKCVK 282
FCIGFT + ++TCYAQ +Q+ Q RK V+
Sbjct: 138 FCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 84.2 bits (199), Expect = 7e-17
Identities = 36/71 (50%), Positives = 55/71 (77%)
Frame = +3
Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P
Sbjct: 162 RQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Query: 435 RFEISKLMELH 467
+F++ KLME+H
Sbjct: 222 KFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 318 EVVNKLIPDSIAKDIEKACHGIYPLRD 398
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 62 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 151
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 432 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 316
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,011,948
Number of Sequences: 37544
Number of extensions: 336923
Number of successful extensions: 1023
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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