Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30272
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         112   2e-25
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         31   0.51 
SB_53177| Best HMM Match : RTP (HMM E-Value=4.7)                       28   4.7  
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)                   28   6.2  
SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)                       27   8.2  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  112 bits (270), Expect = 2e-25
 Identities = 51/71 (71%), Positives = 63/71 (88%)
 Frame = +3

Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
           +AIRKKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P
Sbjct: 45  KAIRKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104

Query: 435 RFEISKLMELH 467
           +F+I KLME+H
Sbjct: 105 KFDIGKLMEMH 115



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 30/51 (58%), Positives = 39/51 (76%)
 Frame = +1

Query: 127 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVEQSERKCV 279
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++   +K V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +3

Query: 216 EPTQDVLRPAHSGRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 395
           EPT D  RP+H   A      +I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 396 DVCIRKVKVLKRPR 437
              IR+ ++ +RPR
Sbjct: 334 SKYIREGRIEERPR 347


>SB_53177| Best HMM Match : RTP (HMM E-Value=4.7)
          Length = 167

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 217 SQRKTCYAQHTQVEQSERKCVKSLH 291
           S+R T  A H  VEQSER   K+LH
Sbjct: 4   SKRATKKALHINVEQSERATQKTLH 28


>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
          Length = 1103

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +3

Query: 240 PAHSGRAIRKKMCEIITR-DVTNSELRE---VVNKLIPDSIAKDIEKA 371
           P  +G A   +  E + R D+   + +E   V+NKL+ +SIAK + +A
Sbjct: 313 PTSTGMAAADQKDETLKRYDINGGDWKEAQSVINKLVDESIAKKVTEA 360


>SB_9937| Best HMM Match : Fer2 (HMM E-Value=6.9)
          Length = 229

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 85  LTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 189
           L T +   +  +WQT +  N+ VK TDG +    C
Sbjct: 142 LPTCQTTMLFSEWQTKLVCNLTVKKTDGKMQMYTC 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,117,605
Number of Sequences: 59808
Number of extensions: 377726
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)