Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30272
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   106   1e-23
U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical pr...    30   1.3  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    27   7.2  
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  106 bits (255), Expect = 1e-23
 Identities = 51/87 (58%), Positives = 62/87 (71%)
 Frame = +1

Query: 1   AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLR 180
           +E  FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LR
Sbjct: 75  SEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLR 134

Query: 181 VFCIGFTNKDSLSQRKTCYAQHTQVEQ 261
           VF I FT K     +KT Y + +++ +
Sbjct: 135 VFVIAFTKKSVNQVKKTSYTKTSKIRK 161



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 39/71 (54%), Positives = 55/71 (77%)
 Frame = +3

Query: 255 RAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 434
           R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP
Sbjct: 160 RKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRP 219

Query: 435 RFEISKLMELH 467
           + ++ +L +LH
Sbjct: 220 KVDLGRLHDLH 230



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 506 VERPEGYEPPVQESV 550
           V+RP+ YEPPVQ+ V
Sbjct: 243 VDRPDDYEPPVQQEV 257


>U28740-1|AAA68317.3|  434|Caenorhabditis elegans Hypothetical
           protein B0563.6a protein.
          Length = 434

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +1

Query: 94  DKLRWMVKKWQTLIEANIDVK-TTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVEQ 261
           D+LR  V++ Q++I+    V+ TT+  V  +F   F  +DSLS     +++H  +EQ
Sbjct: 336 DRLRSFVRRTQSVIQKQGSVEHTTNSKVWIMFKNKF-QRDSLSHHSRKFSRHMPIEQ 391


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 456 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 316
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 377 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTH 273
           ++GL+   GNG++ +L      FRV DV C +  H
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFH 216


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 221 WLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQST 57
           W  + LL    Q     YP + + +    + V  FL+I+  +  +  +PW L ST
Sbjct: 70  WFNQLLLTA--QLIGGYYPFLWYATASYPLHVAVFLSINSIIETIIDLPWDLYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,683
Number of Sequences: 27780
Number of extensions: 274248
Number of successful extensions: 807
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)