Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30271
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 30 0.31
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 29 0.73
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 29 0.96
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 28 1.3
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 28 1.3
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 28 1.7
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.2
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 2.2
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 27 2.9
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 26 6.8
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 6.8
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 6.8
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 6.8
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 23 7.7
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.0
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 9.0
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 30.3 bits (65), Expect = 0.31
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 376 PRAGPLRDSNRQQNCVDFVRRGLPMNTPLKRTVPSPSSIFVLEPIFSPFN*GSV-HTFVI 200
P L D +R + + R +P+ +PL+ T+PS + +E + P + G V
Sbjct: 448 PSETSLADLSRVPSYKEATRSAVPLESPLQSTLPSYEDVARIEHLSRPPSPGIVTPPQRT 507
Query: 199 SVSFIVTLSRCLNVSIDS 146
S SF V+ + S+DS
Sbjct: 508 SPSFFVSPTESTRQSLDS 525
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 29.1 bits (62), Expect = 0.73
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 631 NKSSLLTSTVKE*CNKNQTRKIIICVITGGRTLCESGTVRY 753
N S L T + K+ +K+++C+I+ GRT T+ Y
Sbjct: 214 NISHLCTRKNSQVWGKDAWKKVVVCIISDGRTKIHPRTLAY 254
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 28.7 bits (61), Expect = 0.96
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 74 VASEHYRRHEPPCSADHYKVKAEDAVYANVQAP 172
+ S H RHEPP S + ED Y + P
Sbjct: 88 IVSHHAHRHEPPVSDQPVGIVHEDESYVVIDKP 120
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -2
Query: 692 LRV*FLLHYSFTVEVNSELLLSTYFIRKTGTRQRDLNTVASL 567
LR+ FLLH S+T + S S ++ + Q D N+VASL
Sbjct: 292 LRMPFLLHDSYTEDEISICAESPSYMLASNDAQSDRNSVASL 333
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 593 RDLNTVASLDTNAPNVLSFRPRRLQNQV--NSNIKFQISSE*VPCLEFCRCCPLPDLRPT 420
RDL+ V +DTN P S +P N K + +P LEF + D+RP
Sbjct: 269 RDLSRVIMIDTN-PESWSKQPDNAIAMAPWTGNPKDKELVGLIPLLEFIAIMDIKDVRPV 327
Query: 419 SRSYK 405
+SY+
Sbjct: 328 LKSYQ 332
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 559 FVSSDATVFKSRWRVPV 609
F S D T ++SRWR PV
Sbjct: 37 FTSEDITTWRSRWRAPV 53
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 284 PLQRRIHREASSDEIDTILLSIRVPKRASP 373
P ++H AS +E T+L S+ VP +A+P
Sbjct: 153 PEDDKVHMSASVNESATLLQSMYVPSQANP 182
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 247 VPAQISRMGSVRSASTAYSSGGLFGRNRHNSVVYSSPEAGQPVA 378
+P+QISR+ V S Y+ + R H + VYS + G V+
Sbjct: 668 IPSQISRISQVNSLLNDYN----YNRQSHITRVYSGTDDGSSVS 707
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 403 SLYERLVGRKSGRGQHRQNSRHGTYSLD 486
S Y+R + + Q R + RHGTYSL+
Sbjct: 268 SSYKRSLSPSTRYHQDRPDKRHGTYSLE 295
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 122 GQLSKGAHGDGNVLRLRCTVNLWGPPLPS 36
G G+HGDGN+ R + WG + S
Sbjct: 270 GMSDFGSHGDGNLDNTRTPIIAWGAGIQS 298
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 185 DETYADYESVDTPLVERRKNWFQ 253
D++Y Y + +PL K+WF+
Sbjct: 620 DDSYITYSDIFSPLSHSHKDWFR 642
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +2
Query: 59 DLPYTVASEHYRRHEPPCSADHYK----VKAEDAVYANVQAPRKSHDETYAD---YESVD 217
D+ +T SE R D K VK + ++A + + ET D +E +D
Sbjct: 639 DMLFTSFSEDMNRESIHLICDVLKAKESVKDSEGMFAGEEVEEDAFGETEMDEDDFEEID 698
Query: 218 TPLVERRKNW 247
T +E + +W
Sbjct: 699 TDEIEEQSDW 708
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +2
Query: 32 QYWEEVVPKDLPYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDET 193
+Y EE V + PYT+AS E P SA Y +A + Y +P+ SH++T
Sbjct: 194 RYVEEEVYRRPPYTLAS------EVPSSASAY--QAGYSSYPVRSSPQLSHEDT 239
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 676 YYTIPSPWKSIVNFC*VRISLEK 608
YY++P PW VN C + ++ E+
Sbjct: 242 YYSVPCPWLQ-VNLCRILLACER 263
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 23.0 bits (47), Expect(2) = 7.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 313 GLPMNTPLKRTVPSPSSIFVLEPIFSPFN*GSVHT 209
G L R V SP+SI +++ +FS + +HT
Sbjct: 743 GQKQRIALARAVYSPTSIVLMDDVFSALD---IHT 774
Score = 20.6 bits (41), Expect(2) = 7.7
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 220 SVHTFVISVSFIVTL 176
+VH F+ S +FIVT+
Sbjct: 799 NVHLFMDSAAFIVTV 813
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 25.4 bits (53), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = -3
Query: 691 CGFDFYYTIPSPW 653
CGF+ Y+ + SPW
Sbjct: 555 CGFNIYFPLMSPW 567
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 170 PRKSHDETYADYESVDTPLVERRKNWFQHKYRGWARYGPLQRRIH 304
P SH +T A YE+ +P RK + R ++R G +R ++
Sbjct: 545 PSSSHLQTAAAYENSISPFASFRK---KEAERAYSRMGSFERIVY 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,846
Number of Sequences: 5004
Number of extensions: 67990
Number of successful extensions: 210
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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