Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30271
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    34   0.14 
12_02_0826 + 23485853-23486055,23486747-23487755                       29   4.1  
04_03_0671 + 18549252-18549514,18550286-18550354,18550724-185508...    29   5.4  
08_02_0047 + 11600207-11601010,11601130-11601426                       28   7.1  
04_04_0634 - 26777889-26778452,26778526-26778797,26778905-267791...    28   7.1  
08_01_0458 + 4046809-4047099,4047269-4047321,4047332-4047722,404...    28   9.4  
04_04_0719 + 27541129-27541520,27541607-27541965,27542061-275421...    28   9.4  

>08_01_0051 -
           355392-355450,355507-355634,356271-356425,356883-357012,
           357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 206 ESVDTPLVERRKNWFQHKYRGWARYG-PLQRRI---HREASSDEIDTILLSIRVPKRASP 373
           E+V +PLV   K+ F+ + RG++  G PL+R +   H   S   + T+ LS  +P     
Sbjct: 111 ETVTSPLVNGEKSIFRDQVRGYSALGSPLRREVGNRHNIVSVTIVSTLSLSGVIPTEPLT 170

Query: 374 WR 379
           W+
Sbjct: 171 WK 172


>12_02_0826 + 23485853-23486055,23486747-23487755
          Length = 403

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 418 VAHIKTSCGAGEVAPRAGP 362
           ++H  TS GA E+ PRAGP
Sbjct: 188 ISHTATSIGAREIIPRAGP 206


>04_03_0671 +
           18549252-18549514,18550286-18550354,18550724-18550862,
           18550993-18551008,18551773-18551821,18552163-18552218,
           18552680-18552752,18552838-18552922,18553098-18553130,
           18553400-18553481,18553525-18553610,18554050-18554058,
           18554522-18554581
          Length = 339

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 562 VSSDATVFKSRWRVPVFLMKYVLNKSSLLTSTVKE*CNKNQTRKIIICVITG 717
           V+  A V    W++ VFL+   + K +LLTS        N+TR  +  VI+G
Sbjct: 185 VAERAIVVPQPWQLQVFLVMVFVKKKNLLTS-----MQANKTRVSLSAVISG 231


>08_02_0047 + 11600207-11601010,11601130-11601426
          Length = 366

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 299 IHREASSDEIDTILLSIRVPKRASPWRHLPRTTRCL 406
           IHR   S  +  +++SI VP+   P  HLPR  R L
Sbjct: 42  IHRCGGSASLSELVISIPVPETRKP--HLPRLMRFL 75


>04_04_0634 -
           26777889-26778452,26778526-26778797,26778905-26779117,
           26779497-26779578
          Length = 376

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 302 HREASSDEIDTILLSIRVPKRASPWRHLPR-TTRCLYMSDLLVANRAEGSIDKIQDTVLI 478
           HR++   +++       +P+ A+P+ HLPR  +  L  +D++VA  A  ++     T   
Sbjct: 240 HRQSHPCKLEVEYHHHLLPQEAAPFMHLPRLESPKLPAADIIVATAASSALQPCGHTTAQ 299

Query: 479 HLIFEI 496
            L  +I
Sbjct: 300 QLQLQI 305


>08_01_0458 +
           4046809-4047099,4047269-4047321,4047332-4047722,
           4047998-4048291
          Length = 342

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 282 PYRAHPRYLCWNQFFR 235
           PYR HP +LC  ++FR
Sbjct: 110 PYRFHPSFLCLGEWFR 125


>04_04_0719 +
           27541129-27541520,27541607-27541965,27542061-27542189,
           27542278-27542409,27542522-27542794,27542899-27543299,
           27543424-27543567
          Length = 609

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 259 FVLEPIFSPFN*GSVHTFVISVSFIVTLSRCLNVSIDS 146
           FV EP+F P   G    +V+ V + V+  RC  V +D+
Sbjct: 540 FVGEPVFVPTGGGEDGGYVLLVEYAVSKHRCHLVVLDA 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,124,846
Number of Sequences: 37544
Number of extensions: 441460
Number of successful extensions: 1219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)