Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30271
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12668| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_20444| Best HMM Match : F-box (HMM E-Value=5.2) 31 1.0
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39) 30 1.8
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 29 5.4
SB_51170| Best HMM Match : GPP34 (HMM E-Value=1.1) 28 7.2
SB_51086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_13975| Best HMM Match : SGS (HMM E-Value=3.4) 28 9.5
SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_12668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 269 WARYGPLQRRIHREASSDEIDTILLSIRVPKRASPWRHLPRTTRCLY 409
+ +Y +QRRIH E IDT++ R+P +HLP T CLY
Sbjct: 275 FVKYPQVQRRIHHE-----IDTVIGRDRIPT-LDDVKHLPYTHACLY 315
>SB_20444| Best HMM Match : F-box (HMM E-Value=5.2)
Length = 332
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 164 QAPRKSHDETYADYESVDTPLVERRKNWFQHKYRGWARYGPLQRRIHREASSDEIDTILL 343
Q R +T + + TP ++K W KYR + L+RR+ S+ EI TIL
Sbjct: 133 QVARTFWQKTSHRHPDLQTPY--KQKAWLASKYRMLSNIKSLRRRVCAGESAQEISTILD 190
Query: 344 SIRVPK 361
+ P+
Sbjct: 191 RLLSPE 196
>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
Length = 375
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -2
Query: 614 RKTGTRQRDLNTVASLDTNAPNVLSFRPRRLQNQVNSNIKFQISSE 477
RKT +R + + S++ A N++S P Q QVN+ ++ +S +
Sbjct: 327 RKTTSRSPNSFQLDSIEPEAENMVSISPSWKQGQVNNGKRYSVSDD 372
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 65 PYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYADYESVDTPLVERRKN 244
PY + + Y H P + +Y + +YAN P +H+ YA++ + P
Sbjct: 3171 PYAIHNYPYAIHNYPYANHNYPYANHNYLYANHNYPYANHNYPYANH---NYPYANHNYP 3227
Query: 245 WFQHKY 262
+ H Y
Sbjct: 3228 YANHNY 3233
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = +2
Query: 65 PYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYAD----YESVDTPLVE 232
PY + H PC+ +Y + YAN P +H+ YA+ Y + + P
Sbjct: 3045 PYAKHNNPNAIHNYPCAIHNYPYANHNYPYANHNYPYANHNYPYANHNYPYANHNYPFAN 3104
Query: 233 RRKNWFQHKY 262
+ H Y
Sbjct: 3105 HNYPFANHNY 3114
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/66 (22%), Positives = 27/66 (40%)
Frame = +2
Query: 65 PYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYADYESVDTPLVERRKN 244
P+ + Y +H P + +Y + YAN P +H+ YA++ + P
Sbjct: 3038 PFANHNNPYAKHNNPNAIHNYPCAIHNYPYANHNYPYANHNYPYANH---NYPYANHNYP 3094
Query: 245 WFQHKY 262
+ H Y
Sbjct: 3095 YANHNY 3100
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +2
Query: 65 PYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYADYES 211
PY + + Y H P + +Y + +AN P +H+ YA + +
Sbjct: 3003 PYAIHNYPYANHNYPFANHNYPFANHNYPFANHNYPFANHNNPYAKHNN 3051
>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = +2
Query: 86 HYRRHEPPCSADHYKVKAEDAVYANVQA--PRKSHDETYADYESVDTPLVERRKNWFQHK 259
H RH +D A+D +NV + R +D +S T ++ K WF +
Sbjct: 321 HPERHTKSTDSDR---SADDNTTSNVFSLTARSRYDGDVVTDKSTATHIIANSKFWFSNY 377
Query: 260 YRGWARYGPLQRR 298
Y Y +QRR
Sbjct: 378 YYNEGFYSSMQRR 390
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 26 KDQYWEEVVPKDLPYTVASEHYRRHE--PPCSADHYKVKAEDAVYANVQAPRKSHDET 193
+D Y ++ P+D + S H+ PPC +DH + D+ + D+T
Sbjct: 183 RDSYHDQKSPRDSDHDQTSPRDSDHDQTPPCDSDHDQTSPRDSDHDQTSPCDSDLDQT 240
>SB_51170| Best HMM Match : GPP34 (HMM E-Value=1.1)
Length = 774
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKS 181
+E +P+L +D+Y P Y Y+ EP S+D ++ ED N Q
Sbjct: 553 YEAYPDLDEDEYSHRKDPDGDYYEEQVNDYQEAEPGDSSDEHEEYTEDKEEHNPQG-LVQ 611
Query: 182 HDETY 196
DE Y
Sbjct: 612 RDEHY 616
>SB_51086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 17 ELLKDQYWEEVVPKDLPYTVASEHYRRH-EPPCSADHYKV 133
+LL + +V + PYT +S HY H E PC+ DH V
Sbjct: 56 DLLAVKNISKVATQGQPYT-SSYHYHTHWEFPCNTDHDSV 94
>SB_40873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2496
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Frame = +2
Query: 41 EEVVPKDLPYTVASEHYRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYA----DYE 208
EE V D Y E Y H+ + D Y +HDE Y +Y
Sbjct: 1776 EEYVTHDEEYVTHDEEYVTHDEEYVTHDEEYVTHDEEYVTHDEEYVTHDEEYVTHDEEYV 1835
Query: 209 SVDTPLVERRKNWFQHKYRGWARYG 283
+ D V K + H R G
Sbjct: 1836 THDEEYVTHDKEYVTHDKDNMQRLG 1860
>SB_13975| Best HMM Match : SGS (HMM E-Value=3.4)
Length = 473
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +2
Query: 89 YRRHEPPCSADHYKVKAEDAVYANVQAPRKSHDETYADYESVDTPLVERRKN 244
+ R +P S D ++ D V + RKSH E++ + S + P E N
Sbjct: 210 FDRAKPRKSRDLWQRLVSDNVRIYTRETRKSHKESFIERYSTEKPKTEAASN 261
>SB_8606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 487 YQVNKYRVLNFVDAALCPICDQQV-AHIKTSCGAGEVAPRAGPLRDSNRQQNCVDFV 320
Y +++LN + AAL P+ + +K+ C ++ PLR + + CV V
Sbjct: 505 YATTDFKILNTLKAALSPVYFLSITCSVKSECADSSLS----PLRFATEKSKCVSIV 557
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/86 (26%), Positives = 35/86 (40%)
Frame = -3
Query: 499 SNFKYQVNKYRVLNFVDAALCPICDQQVAHIKTSCGAGEVAPRAGPLRDSNRQQNCVDFV 320
S+ KY + +L+ + + I H + CG G +R N QQ D
Sbjct: 2654 SSLKYVNHPSSILSPFNPVISQIKPCDGWHARVCCGVASARGLPG-VRHPNGQQGHGD-- 2710
Query: 319 RRGLPMNTPLKRTVPSPSSIFVLEPI 242
+P++ +P P IFVL PI
Sbjct: 2711 ---VPLSLCCSHCIPGPVHIFVLLPI 2733
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,024,404
Number of Sequences: 59808
Number of extensions: 509808
Number of successful extensions: 1409
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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