Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30271
(765 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC041664-1|AAH41664.1| 604|Homo sapiens BEST1 protein protein. 32 2.0
BC015220-1|AAH15220.1| 498|Homo sapiens BEST1 protein protein. 32 2.0
AY515704-1|AAR99654.1| 585|Homo sapiens bestrophin 1 protein. 32 2.0
AF073501-1|AAC33766.1| 585|Homo sapiens vitelliform macular dys... 32 2.0
AF073500-1|AAC64926.1| 585|Homo sapiens vitelliform macular dys... 32 2.0
AF057169-1|AAC64343.1| 585|Homo sapiens bestrophin protein. 32 2.0
DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein. 31 4.5
AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein. 31 4.5
AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein. 31 4.5
BC032393-1|AAH32393.1| 200|Homo sapiens RNF170 protein protein. 31 6.0
>BC041664-1|AAH41664.1| 604|Homo sapiens BEST1 protein protein.
Length = 604
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 266 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 296
>BC015220-1|AAH15220.1| 498|Homo sapiens BEST1 protein protein.
Length = 498
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 239 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 269
>AY515704-1|AAR99654.1| 585|Homo sapiens bestrophin 1 protein.
Length = 585
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 326 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 356
>AF073501-1|AAC33766.1| 585|Homo sapiens vitelliform macular
dystrophy protein protein.
Length = 585
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 326 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 356
>AF073500-1|AAC64926.1| 585|Homo sapiens vitelliform macular
dystrophy protein protein.
Length = 585
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 326 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 356
>AF057169-1|AAC64343.1| 585|Homo sapiens bestrophin protein.
Length = 585
Score = 32.3 bits (70), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 2 HEEHPELLKDQYWEEVVPKDLPYTVASEHYRR 97
H++ P + D YW + P+ PYT AS +RR
Sbjct: 326 HQDLPRMEPDMYWNKPEPQP-PYTAASAQFRR 356
>DQ118293-1|AAZ99029.1| 2391|Homo sapiens filaggrin 2 protein.
Length = 2391
Score = 31.1 bits (67), Expect = 4.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +1
Query: 271 GSVRSASTAY-----SSGGLFGRNRHNSVVYSSPEAGQPVAXXXXXXKMSLYERLVGRKS 435
GS S S+ Y SSG FG +H S S GQ + +E G+ S
Sbjct: 926 GSGSSQSSGYGQHGSSSGQTFGFGQHRSGSGQSSGFGQHGSGSGQSSGFGQHESGSGKSS 985
Query: 436 GRGQHRQNSRHGTY 477
G GQH S Y
Sbjct: 986 GFGQHESRSSQSNY 999
>AY827490-1|AAX12417.1| 2391|Homo sapiens ifapsoriasin protein.
Length = 2391
Score = 31.1 bits (67), Expect = 4.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +1
Query: 271 GSVRSASTAY-----SSGGLFGRNRHNSVVYSSPEAGQPVAXXXXXXKMSLYERLVGRKS 435
GS S S+ Y SSG FG +H S S GQ + +E G+ S
Sbjct: 926 GSGSSQSSGYGQHGSSSGQTFGFGQHRSGSGQSSGFGQHGSGSGQSSGFGQHESGSGKSS 985
Query: 436 GRGQHRQNSRHGTY 477
G GQH S Y
Sbjct: 986 GFGQHESRSSQSNY 999
>AL356504-2|CAC13173.2| 2391|Homo sapiens filaggrin 2 protein.
Length = 2391
Score = 31.1 bits (67), Expect = 4.5
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Frame = +1
Query: 271 GSVRSASTAY-----SSGGLFGRNRHNSVVYSSPEAGQPVAXXXXXXKMSLYERLVGRKS 435
GS S S+ Y SSG FG +H S S GQ + +E G+ S
Sbjct: 926 GSGSSQSSGYGQHGSSSGQTFGFGQHRSGSGQSSGFGQHGSGSGQSSGFGQHESGSGKSS 985
Query: 436 GRGQHRQNSRHGTY 477
G GQH S Y
Sbjct: 986 GFGQHESRSSQSNY 999
>BC032393-1|AAH32393.1| 200|Homo sapiens RNF170 protein protein.
Length = 200
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -3
Query: 472 YRVLNFVDAALCPICDQQVAHIKTSCGAGEVAPRAGPLRDSNRQQNCVDFVRRGLPMNTP 293
+R +++ A CPIC Q + K+S + + A D+ C R G P + P
Sbjct: 115 WRYGSWLGAISCPICRQTGSSEKSSRASEQTHQEAVACLDTQNSPACTVGCRSG-PQHIP 173
Query: 292 LKRTVPSPS 266
R +PS S
Sbjct: 174 HDRMLPSAS 182
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,700,156
Number of Sequences: 237096
Number of extensions: 2334274
Number of successful extensions: 5173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5163
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -