Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30271
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49150.1 68416.m05372 F-box family protein contains F-box dom...    30   1.9  
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea...    29   3.4  
At5g26920.1 68418.m03210 calmodulin-binding protein similar to c...    28   7.8  

>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 590

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 110 CSADHYK-VKAEDAVYANVQAPRKSHDETYADYE 208
           C AD YK +  +  VYA++     SH  T+A YE
Sbjct: 254 CVADKYKNMNFDSLVYASICLQMTSHQRTHASYE 287


>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
           family protein SOF1 (involved in rRNA processing)
           protein-yeast
          Length = 442

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -2

Query: 104 AHGDGNVL---RLRCTVNLWGPPLPSIDLSAV 18
           A  DGNVL      CTV LW  P PS++ S++
Sbjct: 107 ASTDGNVLVSCGTDCTVRLWNVPRPSLEDSSI 138


>At5g26920.1 68418.m03210 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 83  EHYRRHEPPCSADH-YKVK--AEDAVYANVQAPRK 178
           E Y++H PPC +D  ++++  A+D V A   A RK
Sbjct: 158 ESYKKHHPPCPSDEVWRLEKIAKDGVSATRLAERK 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,654,523
Number of Sequences: 28952
Number of extensions: 349933
Number of successful extensions: 903
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)