Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30270
         (725 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q38EZ9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.2  
UniRef50_A0BHI3 Cluster: Chromosome undetermined scaffold_108, w...    33   7.2  

>UniRef50_Q38EZ9 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 151

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = -2

Query: 658 ILPPDKFDNKQIVCMCVCQ-IHGSVCDVFLSIIKKNLIILHSCIFSASVGNSYSSVRVIF 482
           +L P  F  +  +CMC+C  +H  VC VF  +    L++L   +F  S GNS S++   F
Sbjct: 39  VLTPVSF--RVCMCMCMCMCVH--VCCVFFLLFLLILLLL-LFLFFVSAGNSKSNIPATF 93

Query: 481 K*KGLQSFCFTY*YIDVLYYNV 416
                  +C+ + Y   L +++
Sbjct: 94  --HHYYYYCYLFIYSFYLLFSI 113


>UniRef50_A0BHI3 Cluster: Chromosome undetermined scaffold_108,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_108,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 318

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = -2

Query: 706 LLYFYIKDKQYLNLF*ILPPDKFDNKQIVCMCVCQIHGSVCDVFLSIIKKNLIILHSCIF 527
           L+Y ++KD  Y   F  L   ++ +     +   ++H  +  VFL I   NL+ +   I 
Sbjct: 184 LIYIFLKDYDYEKDFTELDVSQWASLVFSSLLASRLHNEL-QVFLMIFASNLLFIFVPIL 242

Query: 526 SASVGNSYSSV-RVI 485
             S+   Y+SV RVI
Sbjct: 243 QRSIKQKYNSVFRVI 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,892,307
Number of Sequences: 1657284
Number of extensions: 11434845
Number of successful extensions: 20954
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20928
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)