Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30270
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0605 + 4821363-4823246                                           32   0.40 
12_01_1117 - 11922304-11922423,11922673-11922801,11923070-119231...    30   2.2  
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789...    28   8.7  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   8.7  

>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -2

Query: 643 KFDNKQIVCMCVCQIHGSVCDVFLSIIKKNLIILHSCIFSASVGNSYSSVRVIFK*KGLQ 464
           ++ N  ++ +C   +HG V D FLS  K  +++L     +  +  S  +V  +F+  G Q
Sbjct: 224 RYGNLTLLDLCRNNLHGDVPDGFLSFPKLRILVLSENNLTGKIPRSLLNVTTLFRFGGNQ 283

Query: 463 S 461
           +
Sbjct: 284 N 284


>12_01_1117 -
           11922304-11922423,11922673-11922801,11923070-11923155,
           11923724-11923863,11923888-11924119,11924297-11924733,
           11925240-11925559
          Length = 487

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 275 DGVH*PWSYLMYKVKQGIAYVCREDAKAVVLY 180
           +G H PW Y   +V +G  Y  +ED K  V Y
Sbjct: 56  EGHHVPWEYKDNEVIKGATYAHKEDMKEAVKY 87


>03_06_0762 +
           36078414-36078539,36078700-36078750,36078832-36078981,
           36079055-36079803,36079914-36080013,36080116-36080259,
           36080333-36080452,36080532-36080846
          Length = 584

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  HKNRLSFGFRFYNTSILH--LHKDVAEDVFPQEFLHLKSR 179
           H  +L+F    YNT I+H  LH  +  +  P++ L LK++
Sbjct: 375 HHQKLAFWLNIYNTCIMHGILHNGLPSN--PEKLLALKNK 412


>01_07_0238 +
           42209407-42209964,42210039-42210561,42212577-42212665,
           42212981-42213191,42213265-42213446,42213573-42213812,
           42214691-42214878,42215230-42215323,42215407-42215463,
           42215552-42215686,42216460-42216525,42216745-42216858,
           42217849-42218010,42218093-42218221,42218323-42218424,
           42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 649 PDKFDNKQIVCMCVCQIHGS--VCDVFLSIIKK 557
           P+K  + +    C+ Q+ GS  +C++FLS++K+
Sbjct: 594 PEKRSHLKDALRCLAQLSGSTNICNLFLSLVKR 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,208,623
Number of Sequences: 37544
Number of extensions: 289036
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)