Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30270
         (725 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34799| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-09)                 30   1.7  
SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)           29   5.1  
SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)                   29   5.1  
SB_11487| Best HMM Match : Guanylate_cyc (HMM E-Value=2.3e-06)         28   8.9  

>SB_34799| Best HMM Match : 7tm_1 (HMM E-Value=8.3e-09)
          Length = 225

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 471 PFYLKITRTEEYEFPTLAENIQECRMIRFFLIMLKNTS-HTLPCI 602
           PFYL+I    E+   T   +I  C+++ F   +L +TS  TL CI
Sbjct: 79  PFYLEIFNMFEWCLETYIRSIYFCKVVNFGQCLLVSTSVLTLACI 123


>SB_7818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = -2

Query: 613 CVCQIHGSVCDVFLSIIKKNLIILHSCIFSASVGNSYSSVRVIFK*KGLQSFCFTY*YID 434
           C    + S C V +  +   +I + S      + +SY   RVI   K ++S C    +ID
Sbjct: 5   CRSMSNKSTCRVIVIELSCRVISIESSCRLIFIESSY---RVILSSKFIESSCRVI-HID 60

Query: 433 VLYYNVILRVYSTRM 389
           + +Y VIL +Y  R+
Sbjct: 61  LSFYRVILLIYPYRV 75


>SB_16677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 610 VCQIHGSVCDVFLSIIKKNLIILHSCIFSASVGNSYSSVR 491
           VC +HG V  VF SI K + +  H    ++S+ + +  +R
Sbjct: 225 VCHVHGGVMGVFNSIDKLDFVRYHVPTLNSSISHIFVGLR 264


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +3

Query: 465 CNPFYLKITRTEEYEFPTLAENIQECRMIRF 557
           C+PF+++  +  +Y+ P + + +  CR +R+
Sbjct: 566 CHPFFVRCIKPNDYKKPMMFDRLLCCRQLRY 596


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 290 LGFPIDGVH*PWSYLMYKVKQGIAYVCREDAKAVVL 183
           L  P+   H P +++ YK+  GIA +C   A +V+L
Sbjct: 779 LADPLARAHPPAAFITYKIFHGIASICVVSAYSVLL 814


>SB_13146| Best HMM Match : Laminin_G_2 (HMM E-Value=1.5e-25)
          Length = 614

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 637 DNKQI-VCMCVCQIHGSVCDVFLSIIKKNLIILHSCIFSASVGNSYSSVRVIFK 479
           DN Q+ V +   QIHG  C+  L  +    + ++ C F  +   S  S R+I K
Sbjct: 277 DNYQMNVWLTDFQIHGEWCERHLQTVVTGNVFVYDCFFHCTETPSCRSDRLIVK 330


>SB_18338| Best HMM Match : MFS_1 (HMM E-Value=0.038)
          Length = 451

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 592 YHVFDTHTCILFVYCQTCRVV 654
           +HV++  T + F +C+TCR V
Sbjct: 187 FHVYEPKTSMTFKFCKTCRFV 207


>SB_11487| Best HMM Match : Guanylate_cyc (HMM E-Value=2.3e-06)
          Length = 360

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 604 DTHTCILFVYCQTCRVVKFRI 666
           DT TC L   C T R+V+FRI
Sbjct: 44  DTGTCGLLRGCSTSRIVRFRI 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,136,187
Number of Sequences: 59808
Number of extensions: 388621
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)