Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30269
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 113 2e-26
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 112 4e-26
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 96 5e-21
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 80 3e-16
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 75 1e-14
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 33 0.054
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 32 0.071
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 31 0.16
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 25 0.22
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 30 0.29
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 1.2
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 28 1.5
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 28 1.5
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 28 1.5
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 27 2.0
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 2.7
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 27 2.7
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 3.5
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 4.7
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 4.7
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 6.2
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 26 6.2
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 6.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 8.2
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.2
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 8.2
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 113 bits (273), Expect = 2e-26
Identities = 53/62 (85%), Positives = 58/62 (93%)
Frame = -3
Query: 694 LTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVN 515
L+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV+
Sbjct: 459 LSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVS 518
Query: 514 EA 509
EA
Sbjct: 519 EA 520
Score = 99.5 bits (237), Expect = 4e-22
Identities = 43/87 (49%), Positives = 63/87 (72%)
Frame = -2
Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLD 330
+KY+ ED+ + IQAKN LESY +S++++++D LK+K+ SDK+ I +TI+WLD
Sbjct: 521 EKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLD 580
Query: 329 SNQLADKEEYEHKQKELEGICNPIIRR 249
N A K+EYE KQKELEG+ NPI+ +
Sbjct: 581 HNTTAAKDEYEDKQKELEGVANPIMAK 607
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 112 bits (270), Expect = 4e-26
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = -3
Query: 694 LTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVN 515
L+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI+RMV
Sbjct: 459 LSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVA 518
Query: 514 EA 509
EA
Sbjct: 519 EA 520
Score = 98.3 bits (234), Expect = 1e-21
Identities = 42/87 (48%), Positives = 64/87 (73%)
Frame = -2
Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLD 330
+KY+ ED+ + IQAKN LESY +S++++++D LK+K+ SDK+T+ +TI+WLD
Sbjct: 521 EKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLD 580
Query: 329 SNQLADKEEYEHKQKELEGICNPIIRR 249
SN A K+E+E KQKELE + NPI+ +
Sbjct: 581 SNTTAAKDEFEAKQKELESVANPIMAK 607
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 95.9 bits (228), Expect = 5e-21
Identities = 48/80 (60%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Frame = -3
Query: 694 LTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMV 518
L GIPPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV
Sbjct: 488 LRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMV 547
Query: 517 NEAR--STETRMTSKRRPSR 464
EA + E ++ +R +R
Sbjct: 548 KEAEEFAEEDKILKERIEAR 567
Score = 69.7 bits (163), Expect = 4e-13
Identities = 32/89 (35%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = -2
Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDNCNDTIKWL 333
+++ ED KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD D +WL
Sbjct: 551 EEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWL 610
Query: 332 D-SNQLADKEEYEHKQKELEGICNPIIRR 249
+ + A KEE+E ++++L+ + +PI ++
Sbjct: 611 EIHGEDASKEEFEDQRQKLDAVVHPITQK 639
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 80.2 bits (189), Expect = 3e-16
Identities = 38/65 (58%), Positives = 50/65 (76%)
Frame = -3
Query: 703 NSSLTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIER 524
N LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE
Sbjct: 499 NFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEA 557
Query: 523 MVNEA 509
MV +A
Sbjct: 558 MVADA 562
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = -2
Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTME--DEKLKEKISDSDKQTILDNCNDTIKW 336
+KYR D +KE I+ N ES C ++S ++ +KL ++ + + I D K
Sbjct: 563 EKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKV 622
Query: 335 LDSNQLADKEEYEHKQKELE 276
++ E+ + K E++
Sbjct: 623 NAGDEGITSEDMKKKIDEIQ 642
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 74.9 bits (176), Expect = 1e-14
Identities = 33/62 (53%), Positives = 44/62 (70%)
Frame = -3
Query: 694 LTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVN 515
LTGIPP PRG ++E TF++DANGIL V+A+EK+T + I ITN G LS +I+ M+
Sbjct: 464 LTGIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIE 523
Query: 514 EA 509
A
Sbjct: 524 NA 525
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 32.7 bits (71), Expect = 0.054
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -3
Query: 649 VTFDIDANGILNVSA---IEKSTNKENKITITNDKGR---LSKEEIERMVNEARSTETRM 488
VT + D + LN + +E K+N I N + LSKEE R + + R+
Sbjct: 49 VTHETDLDEFLNTAELGEVEFIAEKQNVTVIQNPEQNPFLLSKEEAARSKQKQEKNKDRL 108
Query: 487 TSKRRPSRPRMHWNLTASA 431
T RRP HW+ T +A
Sbjct: 109 TIPRRP-----HWDQTTTA 122
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 32.3 bits (70), Expect = 0.071
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 634 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEARSTETRMTSKRR 473
D LNVS + S +E +T ++ R+ +EE +RM ++ T ++R
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKR 111
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 31.1 bits (67), Expect = 0.16
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = -2
Query: 476 ETIQAKNALESYCFSMKSTMED--EKLKEKISDSDKQTILDNCNDTIKWL-DSNQLADKE 306
ET+ KNALE Y + ++ ++D + S + +L D WL + + K
Sbjct: 575 ETVDRKNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKA 631
Query: 305 EYEHKQKELEGICNPIIRRCTRVPEESPEVCRASR 201
Y K ++L + PI +R E + +A R
Sbjct: 632 VYTAKLEDLMRVGGPIRQRYLDAEEAKRQKVQAER 666
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.4 bits (53), Expect(2) = 0.22
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 491 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLDSNQLA 315
D ++E I A AL + E+ I +K T+ D NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 314 DK 309
DK
Sbjct: 238 DK 239
Score = 23.8 bits (49), Expect(2) = 0.22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 242 RVPEESPEVCRASRAEHPEPEVP 174
++ ++ P RASRA EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 30.3 bits (65), Expect = 0.29
Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = -2
Query: 434 SMKSTMEDEK--LKEKISDSDKQTILDNCNDTIKWLDSNQLADKEEYEHKQKELEG 273
S +ST+E+ + LKE+I SD++ + N ++T + +A ++Y+ + + L+G
Sbjct: 69 SYRSTLEEWRRHLKEEIGKSDRKALFGNRDET----SGDYIASDQDYDQRTRLLQG 120
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 626 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAYG**GKKYRNEDDKQKE 474
R P R +YRE H + + H R QGR +Y KK + D+ E
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY----KKRSHRSDRYTE 367
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = -2
Query: 491 DDKQKETIQAKNALESYCFSMKST-MEDEKLKEKISDSDKQTILDNCNDTIKWLDSNQLA 315
+DK E +N +ES+ M S +E EK++ KISD+ + N I ++ N A
Sbjct: 445 EDKNLELF-LQNHIESFFPIMSSPYVECEKMERKISDAFQHGRFFNILCKIMFIIDNNRA 503
Query: 314 DKEEYEHKQKEL 279
+E ++KE+
Sbjct: 504 SREYPIAREKEI 515
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 263 PIIRRCTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSIKPTFHTT 108
P++ T+ E+SP+ A +H + + P ++ PS RS K +F+++
Sbjct: 61 PLVTSKTKESEKSPKSWSAIAKKHVQGDSPVKKSHSVPVPSDRSEKKSFNSS 112
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 401 KEKISDSDKQTILDNCNDTIKWL-DSNQLADKEEYEHKQKELE 276
+EKI +++TI D ++ L + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 529 ERMVNEARSTETRMTSKRRPSR 464
+R+ NE S E TSK+RPSR
Sbjct: 200 KRLKNEKSSAEISQTSKQRPSR 221
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -2
Query: 494 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWL 333
E DK ET+ K A+ S+ +++++++ K+S D L++CN+ + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = -2
Query: 434 SMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLDSNQLADKEEYEHKQKELEGICNPII 255
S+ S+ KL D K + L NC ++ K DSNQ+ + E K+K+ II
Sbjct: 188 SLVSSNTASKLHLGRKDIVKLSELRNCINSSK--DSNQIQELENLLRKEKQRNTEHEKII 245
Query: 254 RRCTRVPEE 228
RR + +E
Sbjct: 246 RRMKKELKE 254
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 609 ETLRIPLASMSKVTSI*GTPRGAGGIP 689
E L PLA MS TSI G G GG P
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFP 102
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 233 EESPEVCRASRAEHPEPE 180
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/70 (18%), Positives = 35/70 (50%)
Frame = -2
Query: 491 DDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLDSNQLAD 312
++KQ + + N + K +E + ++++DK+ DN + + D+N+ +
Sbjct: 55 NEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEE 114
Query: 311 KEEYEHKQKE 282
++E + ++ E
Sbjct: 115 EDEEDDEEDE 124
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 461 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKW 336
K E YC S+ ST + + K +SD T+L + T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = -2
Query: 434 SMKSTMEDEKLKEKISDSDKQTILDNC-----NDTIKW 336
S++ T+ED +KE++ D D + +NC + TI+W
Sbjct: 63 SVEQTIED--VKEQLEDEDLARLFENCMPNTLDTTIRW 98
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 500 RNEDDKQKETIQAKNALESYCFSMKST 420
RN+ +KQ TI KNA++ Y S+K T
Sbjct: 255 RNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 589 NKENKITITNDKGRLSKEEIERMVNE 512
NK+ K T D SKEE+E +V E
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVRE 554
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 8.2
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -2
Query: 467 QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDNCNDTIKWLDSNQLADKEEYEHKQ 288
+A+ A + +E EK KEK D D++ DT+ D NQ+ +E E Q
Sbjct: 254 KAREARRRRSAQNSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQ 302
Query: 287 KELE 276
KE++
Sbjct: 303 KEVD 306
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -3
Query: 607 AIEKSTNKENKITITNDKGRLSKEEIERMVNEARSTETRMTSKR 476
AIE+ N+E ++ + ++ R EEI+ ++ S+ T +T++R
Sbjct: 520 AIERRRNEEEELARSRERARKKAEEIKISSSKMNSSPT-ITNER 562
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/74 (20%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = -2
Query: 509 KKYRNEDDKQKETIQAKNAL------ESYCFSMKSTMEDEKLKEKISDSDKQTILDNCND 348
K+ +N+++ +++ A + L ++ + +DEKLK+ D ++ N N+
Sbjct: 826 KRSKNDEESDGKSLSAGHVLMQLRKAANHALLFRKFYDDEKLKQMAKDIMQEEQYKNANE 885
Query: 347 TIKWLDSNQLADKE 306
+ D ++D E
Sbjct: 886 QYIYEDMEVMSDFE 899
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,184
Number of Sequences: 5004
Number of extensions: 47442
Number of successful extensions: 245
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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