Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30269
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    27   0.13 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    27   0.13 
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    27   0.13 
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    27   0.13 
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    27   0.13 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    27   0.13 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.7  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.7  

>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 399
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 398 EKISDSDKQ 372
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 399
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 398 EKISDSDKQ 372
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 399
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 398 EKISDSDKQ 372
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 399
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 230 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 289

Query: 398 EKISDSDKQ 372
            K  ++ K+
Sbjct: 290 RKYGETSKE 298


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/69 (20%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSM---KSTMEDEKLK 399
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S    +   ++E+  
Sbjct: 219 HYSRERSCSRDRNREYRKKDRRYEKLHNEKEKLLEERTSCKRYSRSREREQKLYKNEREY 278

Query: 398 EKISDSDKQ 372
            K  ++ K+
Sbjct: 279 RKYGETSKE 287


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = -2

Query: 569 HYQRQRSSLQGRDRAYG**GKKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEK 405
           HY R+RS  + R+R Y    ++Y    +++++ ++ + + + Y  S +   +  K
Sbjct: 230 HYSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYK 284


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
 Frame = -2

Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDN----CNDTI 342
           K+Y    ++++ + + +     Y  + K    D K +EK  +    + L N     N+  
Sbjct: 37  KRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96

Query: 341 KWLDSNQLADKEEYEHKQKELEGICNPIIRRCTRVPEE--SPEVCRASRAEHPEPEVPPP 168
           K L  N    K+ Y +    +E I  P+   C   P     P +    +        PP 
Sbjct: 97  KKLYCNNY--KKLY-YNINYIEQIPIPVPIYCGNFPPRPMGPWISMQEQIPRFRYIGPPT 153

Query: 167 GLEALAPPSRRSIKPTFHTTRKPT 96
                 PP+    +P  +    PT
Sbjct: 154 PFPRFIPPNAYRFRPPLNPRFGPT 177


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 6/144 (4%)
 Frame = -2

Query: 509 KKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDN----CNDTI 342
           K+Y    ++++ + + +     Y  + K    D K +EK  +    + L N     N+  
Sbjct: 37  KRYSRSREREQNSYKNEREYRKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNY 96

Query: 341 KWLDSNQLADKEEYEHKQKELEGICNPIIRRCTRVPEE--SPEVCRASRAEHPEPEVPPP 168
           K L  N    K+ Y +    +E I  P+   C   P     P +    +        PP 
Sbjct: 97  KKLYCNNY--KKLY-YNINYIEQIPIPVPIYCGNFPPRPMGPWISMQEQIPRFRYIGPPT 153

Query: 167 GLEALAPPSRRSIKPTFHTTRKPT 96
                 PP+    +P  +    PT
Sbjct: 154 PFPRFIPPNAYRFRPPLNPRFGPT 177


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 629 QRYPQRFRYREVHQ-QGEQDHHYQRQRSSLQGRDR 528
           +RY  R R RE +  + E+++   R+RS  + RDR
Sbjct: 270 KRY-SRSREREQNSYKNEREYRKYRERSKERSRDR 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,723
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)