Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30267
         (728 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.47 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.47 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   3.3  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   7.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 341 NPNFGAPQYSPYANNVIIQP--SIQTYNQE 424
           +PN+ +P+  P  NN I+ P  S+QT + +
Sbjct: 446 DPNYISPEVFPNTNNAIMTPPASVQTESSD 475


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 341 NPNFGAPQYSPYANNVIIQP--SIQTYNQE 424
           +PN+ +P+  P  NN I+ P  S+QT + +
Sbjct: 394 DPNYISPEVFPNTNNAIMTPPASVQTESSD 423


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 201  NQYPKYDSTINSDQIYF-DTTDLVALLIFKRNYLI*MD*RLEQKYRLLTPISELRNIVLM 377
            N Y   D  +   ++ F  +T+++        YL  +D   E+K R+   + ELRN  + 
Sbjct: 1211 NPYWIEDPDVRKGEVEFLSSTEILFWKDLLDKYLYPIDENKEEKARIAKELIELRNKSVF 1270

Query: 378  QTML*FNRQYKLI 416
               + FN  + L+
Sbjct: 1271 AFFM-FNALFVLV 1282


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 201  NQYPKYDSTINSDQIYF-DTTDLVALLIFKRNYLI*MD*RLEQKYRLLTPISELRNIVLM 377
            N Y   D  +   ++ F  +T+++        YL  +D   E+K R+   + ELRN  + 
Sbjct: 1211 NPYWIEDPDVRKGEVEFLSSTEILFWKDLLDKYLYPIDENKEEKARIAKELIELRNKSVF 1270

Query: 378  QTML*FNRQYKLI 416
               + FN  + L+
Sbjct: 1271 AFFM-FNALFVLV 1282


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 176 FTKQLPDTESVSQIRFHNQFRSNLF*HNRPSGS 274
           +TK L D ++++ +R ++Q +S+ +     SGS
Sbjct: 776 YTKPLVDAQTMNLLRSYHQQQSHHYGRRERSGS 808


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
 Frame = +2

Query: 332 PIINPNFGAPQYSPYANNVI----IQPSIQTYNQE--TTKIVPQKSGTPAKK 469
           PI++  FG  + +  A+NVI    + P+  T  +   TTK   + S  P  K
Sbjct: 137 PILSNRFGENEEADAASNVISSTPLPPTTSTTTRTTLTTKFTTKPSTKPTNK 188


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 254 VKINLI*IDCGIVFGILILCPEAAL 180
           V +NLI   CG VF   + C +  L
Sbjct: 62  VLVNLIFNTCGEVFSAWVRCQDQIL 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,595
Number of Sequences: 336
Number of extensions: 3985
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)