Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30267
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    36   0.008
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.68 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.8  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ...    25   8.4  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +2

Query: 224  HNQFRSNLF*HNRPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPS 403
            H+  R+N   H+ P  +   Q+  +N   L  G  +P +  +F +PQ SP  N V+ +PS
Sbjct: 876  HSLSRANSPVHHYPFATPPSQR--ANKYPLNNGANVPALLNSFSSPQLSPLVNRVLNEPS 933

Query: 404  IQTYNQETTKIVPQKSG 454
                +  + K    K G
Sbjct: 934  SSPLSSSSLKSPLSKEG 950


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 624 WALLQQGATGIPLWDQ 671
           W L++QG TG+P W++
Sbjct: 84  WTLMKQGFTGVPTWEE 99


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +2

Query: 281  IQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIVPQKSGTP 460
            ++  L   N L I  K+P   P+     Y P A +  +  S  T  ++  K  P  +  P
Sbjct: 873  VETVLEKFNDLKIENKVPETAPDVVPSSYPPAAES-NVSVSSDTSTKDVEKQEPSSAEQP 931

Query: 461  AKKMTDTFFKRK 496
            A+ + ++  + K
Sbjct: 932  AQGIAESLRRLK 943


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 575 LLVICLNIFIPKMCYSIIDTIDPGRVTCV*KTYLSSF*LVCRTF-EER--FWWF 423
           L  I   IFIP   Y  +  ++P       +TYL  F  +  +F EER  FW F
Sbjct: 410 LWFIFFGIFIPVYLYMNLAFVEPSSKLLEDQTYLHLFGSIYNSFREERVMFWIF 463


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 128 HDEIYTCFIHTGVFFSFASSN 66
           H ++Y+ FIHTG+    +SS+
Sbjct: 70  HPDLYSTFIHTGIATIVSSSD 90


>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 152 MLFRVKRGFTKQLPDTESVSQIRFHNQFRSNLF*HNRP 265
           +L +V    +   PDTESV Q+   +  +S+LF   +P
Sbjct: 236 LLSKVNEKISDTFPDTESVRQLYQLSLKKSDLFAQKQP 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,801
Number of Sequences: 5004
Number of extensions: 65883
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)