Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30267
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.7  
SB_2888| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)             28   8.9  
SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             28   8.9  

>SB_48303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 607 LHHDIIGLFFNKALQGFHFGIRSVAAFASR 696
           LHH+I  LFF     G H G+R +  F  R
Sbjct: 8   LHHEIQDLFFRDLRLGDHKGLRELTGFFIR 37


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 275 INIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTK 433
           I + KE+ NL  L     + I+N    A Q  P+A ++I   S++TY +   K
Sbjct: 700 ITLSKEVRNLKWLGFRVPLAIVNKAHQANQLYPFAISLI--ESVRTYERTCEK 750


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 407 QTYNQETTKIVPQKSGTPAKKMTDTFFKRK*HDPD 511
           +++ Q T +I  Q SGTP+K  T++F  R   D D
Sbjct: 321 ESHAQWTVRIRAQDSGTPSKYFTESFTVRVLDDND 355


>SB_2888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 665 PKWNPCSALLKKSPIMS*WRNGDTTMLPG*LLVICLNIFIP 543
           P W  C + +  SP    W   DTT+LP    V+C +  +P
Sbjct: 74  PNWMKCDSTILPSPN---WMKWDTTILPSSNGVMCDSTILP 111


>SB_54120| Best HMM Match : Chlam_PMP (HMM E-Value=1.7e-06)
          Length = 935

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 SQSSFRTQNQYPKYDSTINSDQIYFDTTDLVALLIF 284
           S S+F TQNQ+ KY   I+     F +TD  A L+F
Sbjct: 660 SDSNF-TQNQHTKYYEGISFSTATFISTDSAAPLVF 694


>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 177 SQSSFRTQNQYPKYDSTINSDQIYFDTTDLVALLIF 284
           S S+F TQNQ+ KY   I+     F +TD  A L+F
Sbjct: 688 SDSNF-TQNQHTKYYEGISFSTATFISTDSAAPLVF 722


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,404
Number of Sequences: 59808
Number of extensions: 452013
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)