Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30267
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p...    28   7.9  
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr...    28   7.9  
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres...    28   7.9  

>Z81527-6|CAB04275.1|  739|Caenorhabditis elegans Hypothetical
           protein F35E12.7a protein.
          Length = 739

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 260 RPSGSINIQKELSNLNGLTIGTKIPIINPNFGAPQYSPYANNVIIQPSIQTYNQETTKIV 439
           RP  S    ++L+  +     T IPI   N      +  +    I PS+ T    TTK+ 
Sbjct: 552 RPMQSTTTYQKLAQASSTASTTPIPITTQNISTASIATPSTKTPITPSLITTRSSTTKLS 611

Query: 440 P 442
           P
Sbjct: 612 P 612


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 137 KHFHDEIYTCFIHTGVFFSFASSNFT 60
           K+ +D+I+ CFI + VFF+F  S  T
Sbjct: 149 KYLNDDIFECFIISFVFFNFVISVLT 174


>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
            protein F11A10.1b protein.
          Length = 1289

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 811  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870

Query: 458  PAKKMTDTFFKRK*HDPD 511
            P K    T ++    D D
Sbjct: 871  PPKVFDPTVYEMPLPDDD 888


>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein
            F11A10.1a protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 458  PAKKMTDTFFKRK*HDPD 511
            P K    T ++    D D
Sbjct: 873  PPKVFDPTVYEMPLPDDD 890


>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein
            F11A10.1b protein.
          Length = 1289

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 811  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 870

Query: 458  PAKKMTDTFFKRK*HDPD 511
            P K    T ++    D D
Sbjct: 871  PPKVFDPTVYEMPLPDDD 888


>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein
            F11A10.1a protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 458  PAKKMTDTFFKRK*HDPD 511
            P K    T ++    D D
Sbjct: 873  PPKVFDPTVYEMPLPDDD 890


>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression
            abnormal protein protein.
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +2

Query: 293  LSNLNGLTIGTKIPIINPNF-GAPQYSP----YANNVIIQPSIQTYNQETTKIVPQKSGT 457
            L ++ G T    +  ++ +F  AP+Y      +AN + + PS +T  Q+  + V +K  T
Sbjct: 813  LESMTGFTPILFLSTLDTSFEDAPEYVTEIFRHANCITLNPSRRTIRQKYFEHVIEKINT 872

Query: 458  PAKKMTDTFFKRK*HDPD 511
            P K    T ++    D D
Sbjct: 873  PPKVFDPTVYEMPLPDDD 890


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,438,899
Number of Sequences: 27780
Number of extensions: 362341
Number of successful extensions: 894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)