Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30267
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g63470.1 68416.m07147 serine carboxypeptidase, putative simil...    29   3.2  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    28   7.3  

>At3g63470.1 68416.m07147 serine carboxypeptidase, putative similar
           to SP|P52711 Serine carboxypeptidase II-3 precursor (EC
           3.4.16.6) Hordeum vulgare; contains Pfam profile PF0450
           serine carboxypeptidase
          Length = 502

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 680 ATDLIPKWNPCSALLKKSPIMS*WRNGDTTMLP 582
           AT L  +W PCS+++KK      W +  TT++P
Sbjct: 374 ATKLPYEWQPCSSVIKK------WNDSPTTVIP 400


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 662 KWNP-CSALLKKSPIMS*WR-NGDTTMLPG*LL 570
           KWN  C AL  K P M+ WR    +++LPG L+
Sbjct: 523 KWNRFCQALHHKKPSMTAWRAEQSSSVLPGSLM 555


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,973
Number of Sequences: 28952
Number of extensions: 322286
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)