Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30264
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 28 1.5
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 2.0
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 27 2.0
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 3.5
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 4.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.6
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.0
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.0
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 26 6.0
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 6.0
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.0
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 25 8.0
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 25 8.0
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 689 VLFLQFPVRLLPFMRNWFIFML 624
+LFL PV L+PF+ W ML
Sbjct: 1785 LLFLMLPVLLIPFIDRWHSMML 1806
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 622 RAFLT-LSLVPFKSFFTDFKLLG-NFGSSGILLYFSIILAKWQQPPETH-SHSHL 467
R FL+ LS V F+ FF +++ + I L+F + W+QP + SHS L
Sbjct: 413 RVFLSGLSTVHFQDFFFADQMVSLTYACGNISLFFCLYKRLWRQPQLCNSSHSPL 467
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 242 KVSLFVSVPFLKDLNEPCSKNDR 174
K S+ +S P+L+ LNE SKN++
Sbjct: 330 KYSVGISTPYLRTLNETRSKNEK 352
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -1
Query: 633 LHAEEHF*PFLLYHSNLFSQISNYLETLVPQVSYCT 526
L++ ++F P+ +N+F+ + + ++PQ+++CT
Sbjct: 208 LNSPQYFIPYGTLCANVFATLLLSIMYMIPQITHCT 243
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.5
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = -1
Query: 633 LHAEEHF*PFLLYHSNLFSQISNYLETLVPQVSYCT 526
L++ ++F P+ +N+F+ + + ++PQ+++CT
Sbjct: 208 LNSPQYFIPYGTLCANVFATLLLSIMYMIPQITHCT 243
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 525 KYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHK 653
K S P E K + + NGT R + QHED PH+
Sbjct: 124 KASPTPLESKPQIVSDTTTETSNGTSRRRSSHNQHEDSSPPHE 166
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 67 HSKIFRNYLRFFAKYVSDIT 8
HSK+F LR KY++D++
Sbjct: 1226 HSKVFSRNLRLLKKYLNDVS 1245
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 325 LLAMRDPKALRKIQKTLKVIKSANKSVIEDVDRENTAVTLTGPEQPDQDD 474
+L + + K + + SA+ S+ EDVD E A T P ++DD
Sbjct: 13 VLGLEEEKKSDGGNSEVNIDPSASSSLKEDVDGEEGADTKIDPHLLEEDD 62
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 507 FAKMMEKYSKIPEEPKFPSSLKSVKKDLNGTRER 608
F KM KY EP FP+ K + ++ T+ER
Sbjct: 932 FEKMGRKYGIAEIEPFFPAEDKKLITNIRKTQER 965
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +2
Query: 443 SLALNNLIKM---TMAMSLRRLLPFC*DDGKVQ*DT*GT--KVSK*FEICEKRFEWY 598
S++ +N +KM ++A + ++L FC + T KV+K F+IC+ EW+
Sbjct: 90 SVSTSNTVKMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKEFQICDSSQEWF 146
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Frame = -1
Query: 660 SPFYEE--LVHLHAEEHF*PFLLYHSNLFSQIS-----NYLETLVPQVSYC 529
SPF E L H +H F L+H NL+ + S + L +PQ+S C
Sbjct: 655 SPFLEHTYLYHFGRTDHRHNFSLHHLNLYYESSFGAKASSLFAFLPQLSLC 705
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 73 VQHSKIFRNYLRFFAKYVSDI 11
V+HS + Y RFF+K++ DI
Sbjct: 544 VEHSILHLLYSRFFSKFMKDI 564
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 309 EEKRRASGHAGS*SAPQDPENLKSH 383
E K+R S + GS P+D E L SH
Sbjct: 83 EFKKRCSYYRGSYDKPEDFEGLNSH 107
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +3
Query: 519 MEKYSKIPEEPKFPSSLKSVKKDLNGTRERVK-NALQHEDEPVPHKREKAYWKLEKEN 689
M++ P+F S+ + + K N EP P +EK W ++EN
Sbjct: 1 MKRTGSASSVPRFQRSMSYDQSNSPTAGAHAKANTASPAAEPAPSSKEKENWNRQEEN 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,844
Number of Sequences: 5004
Number of extensions: 50695
Number of successful extensions: 202
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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