Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30264
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)                     29   4.9  
SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.9  
SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         28   6.4  
SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4)                28   8.5  
SB_18623| Best HMM Match : HC2 (HMM E-Value=0.49)                      28   8.5  

>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 428 FSLSTSSITDLLADLMTFKVFWILRSALGSRM 333
           FS  +SSI+D L+ L +   +W+L   LGS M
Sbjct: 400 FSRPSSSISDSLSSLRSRASWWLLSDVLGSSM 431


>SB_35417| Best HMM Match : DTHCT (HMM E-Value=1.7)
          Length = 357

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 543 EEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKENP 692
           E  +   +  S ++DL  T+E  KN      + V  ++EK  W++E++ P
Sbjct: 88  ESDELDRTFTSDRQDLMATKEAPKNWRSTLQKQVQVRKEKKNWEIEEKLP 137


>SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 531 SKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREK 662
           + IP++   PS  K+  KD NG+  ++K      + P    R K
Sbjct: 25  TNIPKQNGVPSKTKTASKDSNGSLNKIKTIENAIEAPDSRSRSK 68


>SB_36962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 531 SKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREK 662
           + IP++   PS  K+  KD NG+  ++K      + P    R K
Sbjct: 25  TNIPKQNGVPSKTKTASKDSNGSLNKIKTIGNAIEAPDSRSRSK 68


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 502 QQPPETHSHSHLDQVVQG 449
           QQPPET+ H+H+ Q + G
Sbjct: 749 QQPPETNHHNHVTQSMPG 766


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 331 AMRDPKALRKIQKTLKVIKSANKSVIEDVDRENTAVTLTGPEQPDQD 471
           A+++ KA+ +     K  K   +  +ED D E+      GPE  D+D
Sbjct: 286 ALKNVKAISRAMDEWKRKKEEGQVELEDEDEEDIYAVKPGPEGDDED 332


>SB_49885| Best HMM Match : Phi-29_GP4 (HMM E-Value=3.4)
          Length = 307

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 489 SGGCCHFAKMMEKYS----KIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKR 656
           SG    + K+ +K+     K+PE+P+     + ++     T + V+    + + P P   
Sbjct: 128 SGYDSWYGKIADKFKNDRKKVPEDPEVVLHKRKIETSAEKTAQHVRRGALNWEPPYPEGE 187

Query: 657 EKAYWKLEKEN 689
           ++A  +  KE+
Sbjct: 188 DEASMQRHKES 198


>SB_18623| Best HMM Match : HC2 (HMM E-Value=0.49)
          Length = 384

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 564 SLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKE 686
           +LK  +   N  RER K  L+   +    KRE++ WK   E
Sbjct: 44  TLKMERSKWNAQRERSKGTLKGNAQKGTLKRERSKWKARME 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,981
Number of Sequences: 59808
Number of extensions: 335405
Number of successful extensions: 974
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)