Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30264
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021572-1|CAA16516.2|  654|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    28   7.5  
Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    27   9.9  
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    27   9.9  

>AL021572-1|CAA16516.2|  654|Caenorhabditis elegans Hypothetical
           protein W06H3.1 protein.
          Length = 654

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 525 KYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAY 668
           +YS  P+ P  P   K VKK+L G +E +K     E + +  K E  Y
Sbjct: 87  QYSADPKVPPKPFEPKPVKKELIGVKENLKETT--EPKKIEKKPENPY 132


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 614  FDPFSCTIQIFFHRFQTTWKLWFLRYLTVLFHH 516
            F  FSC  +IFFH   T++ + FL++  + F H
Sbjct: 1337 FSKFSCPFKIFFHPPATSFGI-FLKFFIMAFDH 1368


>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
            F26H11.2c protein.
          Length = 2266

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 510  AKMMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKE 686
            AK +EK+ ++PE PK P ++   +        R    L+     +  KR+++  K  K+
Sbjct: 897  AKYVEKWIQVPESPKLPLAVTVEEIKTESVSNRKARRLELLVSKITKKRQRSGGKSSKK 955


>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
            F26H11.2b protein.
          Length = 1693

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 510  AKMMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKE 686
            AK +EK+ ++PE PK P ++   +        R    L+     +  KR+++  K  K+
Sbjct: 897  AKYVEKWIQVPESPKLPLAVTVEEIKTESVSNRKARRLELLVSKITKKRQRSGGKSSKK 955


>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
            F26H11.2a protein.
          Length = 1691

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +3

Query: 510  AKMMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKE 686
            AK +EK+ ++PE PK P ++   +        R    L+     +  KR+++  K  K+
Sbjct: 897  AKYVEKWIQVPESPKLPLAVTVEEIKTESVSNRKARRLELLVSKITKKRQRSGGKSSKK 955


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 149 QRNQQQKSSDHFYYKARLDPLKKEQRQKEK 238
           QR QQQ+   H  ++ARL   +++Q+Q+++
Sbjct: 226 QREQQQREQQHREHQARLQQHQQQQQQQQQ 255


>Z46996-9|CAA87097.2|  400|Caenorhabditis elegans Hypothetical
           protein C34C12.6 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 449 PVRVTAVFSLSTSSITDLLADLMTFKVFWILRSAL 345
           PV+   +F L+T +ITD +  +  +   W +RS L
Sbjct: 165 PVQFIVIFDLNTVNITDYVNPMSGYMKLWQIRSEL 199


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
           protein W05B2.4 protein.
          Length = 2265

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 545 GTKVSK*FEICEKRFEWYKRKGQK 616
           G K+ K FEIC+K  + Y+R  QK
Sbjct: 881 GQKLRKIFEICQKLIKNYRRNDQK 904


>Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK795.3 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 516 MMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQH 629
           M+ + +++  E  F  SL+  +K L   RE+++NAL++
Sbjct: 1   MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALEN 38


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 613 LTLSLVPFKSFFTDFKLLGNFGSSGILLYFSII 515
           L  +L+P  +F +  +++ NF +S  L YFSII
Sbjct: 344 LPFALIPMITFTSSKRIMHNFRTSKPLQYFSII 376


>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 567 LKSVKKDLNGTRERVKNALQHED-EPVPHKREKAYWKLEKEN 689
           LK+  ++LN   + V   +  E+  P    R K  WKL +EN
Sbjct: 192 LKAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQEN 233


>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/63 (31%), Positives = 27/63 (42%)
 Frame = +3

Query: 513 KMMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKENP 692
           KM   +   P+  K+  S KS +  ++GT   V  AL+H     P      Y KL   NP
Sbjct: 131 KMTSCHIHFPDSNKYSDSNKSDQVSISGTPVNVFEALKHLRSMCP---LTVYMKLPWYNP 187

Query: 693 VPP 701
             P
Sbjct: 188 GQP 190


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +3

Query: 522 EKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREKAYWKLEKENPVPP 701
           ++ S+I E P+ P+S  ++KK L G  E  K+A   ++ P   K      + E E   PP
Sbjct: 139 DEASEIQEAPENPNSALAIKKRLMGGGESSKSA-PTKNPPKARKSNVKKPEKEAEALAPP 197


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 567 LKSVKKDLNGTRERVKNALQHED-EPVPHKREKAYWKLEKEN 689
           LK+  ++LN   + V   +  E+  P    R K  WKL +EN
Sbjct: 192 LKAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQEN 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,180
Number of Sequences: 27780
Number of extensions: 280339
Number of successful extensions: 1061
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)