Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30264
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17680.2 68414.m02189 transcription factor-related low simila...    30   1.3  
At1g17680.1 68414.m02188 transcription factor-related low simila...    30   1.3  
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    29   2.3  
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf...    29   4.0  
At3g19070.1 68416.m02422 cell wall protein-related similar to ve...    28   5.2  
At3g01230.1 68416.m00029 expressed protein                             28   6.9  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    28   6.9  
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c...    28   6.9  
At5g36940.1 68418.m04430 amino acid permease family protein simi...    27   9.2  
At5g28760.1 68418.m03532 hypothetical protein contains Pfam prof...    27   9.2  
At3g27710.1 68416.m03460 zinc finger protein-related contains si...    27   9.2  

>At1g17680.2 68414.m02189 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 346 KALRKIQKTLKVIKSANKSVIEDVDRENTAVTLTGPEQPDQD 471
           KAL ++  T+ V  +    ++ED  R+   + L+ PE PD D
Sbjct: 456 KALNELSDTVDVRITLASLLLEDGKRDEAVLVLSPPENPDPD 497


>At1g17680.1 68414.m02188 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 346 KALRKIQKTLKVIKSANKSVIEDVDRENTAVTLTGPEQPDQD 471
           KAL ++  T+ V  +    ++ED  R+   + L+ PE PD D
Sbjct: 456 KALNELSDTVDVRITLASLLLEDGKRDEAVLVLSPPENPDPD 497


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 595 PFKSFFTDFKLLGNFGSSGILLYFSIILAKWQQPPETH 482
           PF+ FFT    L N  ++  +  F+     W++ PE H
Sbjct: 26  PFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAH 63


>At3g27720.1 68416.m03461 zinc finger protein-related contains
           Pfam:PF01485 IBR domain
          Length = 493

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 146 AQRNQQQKSSDHFYYKARLDPLKKEQRQKEKL 241
           AQR+  + +  H+ YKA +D LK E + K+ +
Sbjct: 301 AQRDLDRYTHYHYRYKAHIDSLKLEDKLKKSI 332


>At3g19070.1 68416.m02422 cell wall protein-related similar to
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii] gi|12018147|gb|AAG45420;
          Length = 346

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -1

Query: 681 SPISSTPSPFYEELVHLHAEEHF*PFLLYHSNLFSQISNYLETLVP 544
           SP+SS+PSPF    +   A+E   P +    N   QIS  L  L P
Sbjct: 221 SPLSSSPSPFVNPFLRPQAQE---PTIPNFINPIPQISPGLPALFP 263


>At3g01230.1 68416.m00029 expressed protein
          Length = 126

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 6/39 (15%)
 Frame = +3

Query: 504 HFAKMMEKYSK----IPEEPKFPSSLKSVKKD--LNGTR 602
           HF K ++K+++     PEE ++ S ++S+ KD  LNG R
Sbjct: 87  HFGKKLKKFNRRIKRAPEEVRYVSIIQSILKDLGLNGGR 125


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 546 EPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKRE 659
           EPK P +  S       T + V NA + ++EP+P K E
Sbjct: 521 EPKKPEAQSSSILSTQSTVDSVANATKTQNEPLPVKSE 558


>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
           checkpoint protein, putative contains 5 WD-40 repeats
           (PF00400) (1 weak); similar to testis mitotic checkpoint
           protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
          Length = 339

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 489 SGGCCHFAKMMEKYSK--IPEEPKFPSSLKSVKKDLNGTRERVKNALQHEDEPVPHKREK 662
           SGGC  F  + +  +K  + +  K+P+S+ ++    +G    V ++   E+   PH+ + 
Sbjct: 257 SGGCDGFVNIWDGNNKKRLYQYSKYPTSIAALSFSRDGGLLAVASSYTFEEGDKPHEPDA 316

Query: 663 AYWKLEKENPVPP 701
            + +   E  V P
Sbjct: 317 IFVRSVNEIEVKP 329


>At5g36940.1 68418.m04430 amino acid permease family protein similar
           to SP|Q09143 High-affinity cationic amino acid
           transporter-1 (CAT-1) {Mus musculus}; contains Pfam
           profile PF00324: Amino acid permease
          Length = 609

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 516 MMEKYSKIPEEPKFPSSLKSVKKDLNGTRERVKNAL--QHEDEPVPHKREKAYWKLEKEN 689
           ++ +Y   P+E   PSSL+       GT  R K  L  + +D  V  +     W L K+N
Sbjct: 406 LIVRYVVPPDEVPLPSSLQENSSSHVGTSIRSKQPLLGKVDDSVVDKENAPGSWVLNKKN 465


>At5g28760.1 68418.m03532 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 520

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 600 RERVKNALQHEDEPVPHKREKAYWKLEKENPVPP 701
           RE   N  + E+E V  ++ K  WK + E P+ P
Sbjct: 26  READVNRKEMEEEVVKKRKRKKEWKKKTEQPMQP 59


>At3g27710.1 68416.m03460 zinc finger protein-related contains
           similarity to zinc finger proteins and Pfam domain,
           PF01485: IBR domain
          Length = 537

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 146 AQRNQQQKSSDHFYYKARLDPLKKEQRQKEKL 241
           AQR+  + +  H+ YKA +D LK E + ++ +
Sbjct: 341 AQRDLDRYTHYHYRYKAHIDSLKLEDKLRKSI 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,013
Number of Sequences: 28952
Number of extensions: 256354
Number of successful extensions: 813
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)