Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30263
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.5  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 402 VDSVLDVVRKESESCDCLQG 461
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 193 QLERINVYYNEASGGKYVPRASSSTWSPA 279
           QL+R ++ +N    G+  PR+ +++ SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +1

Query: 493 PGPVLDPPHLKDP*RVPRQNHEHILSSPLAQSIRHCRRTIQCDSLS 630
           P P   PP    P   P QN   ++ SP A  I   ++ +Q   LS
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISP-ASGIHQMQQLLQQHILS 84


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +1

Query: 181 DSDLQLERINVYYNEASGGKYVPRASSSTWSPAPWTLSAP 300
           D+ L+   I  Y N+  GG++V       W+P  +  + P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV---RDLIWTPTVYVSNEP 108


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 527 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDEN 661
           +R      I + + ++ +PKVS+       ATLS  +++ N   N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHNAQVN 582


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 647 FQLAGELRESHCM 609
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/58 (29%), Positives = 22/58 (37%)
 Frame = +1

Query: 424 SAKNQNLAIAYRASNLHIPSVAAPGPVLDPPHLKDP*RVPRQNHEHILSSPLAQSIRH 597
           ++ + +L+ A   S  H P V        PP        P Q H H  SSP  Q   H
Sbjct: 284 ASHHSHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHPSQYHPHRGSSPHHQHGNH 341


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 194 SWSASMYTTMKPPAASTCPAHPRRLGARHHGLCPLR 301
           SW +   +      A  C A  R+ G+  +G+C  R
Sbjct: 68  SWQSKWLSINHSACAIRCLAQRRKGGSCRNGVCICR 103


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 606 NHTMRLSQFTS*LKTQTKTYWHRQRRL 686
           NH M L++ ++     + T W R  RL
Sbjct: 425 NHDMSLTKASATFGIPSTTLWQRAHRL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,499
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)