Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30263
(697 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 155 3e-38
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 155 3e-38
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 155 3e-38
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 154 5e-38
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 153 1e-37
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 153 1e-37
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 151 3e-37
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 151 3e-37
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 151 6e-37
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 82 3e-16
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 82 3e-16
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 81 5e-16
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 81 5e-16
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 81 5e-16
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 81 5e-16
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 79 2e-15
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 62 5e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 61 6e-10
At3g24790.1 68416.m03111 protein kinase family protein contains ... 31 0.96
At4g37190.1 68417.m05265 expressed protein 30 1.7
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 2.2
At2g28400.1 68415.m03451 expressed protein contains Pfam profile... 29 3.9
At4g03350.1 68417.m00457 ubiquitin family protein contains INTER... 28 6.8
At2g24200.1 68415.m02891 cytosol aminopeptidase identical to cyt... 28 6.8
At4g02970.1 68417.m00404 ubiquitin family protein contains INTER... 27 9.0
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to... 27 9.0
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to... 27 9.0
At3g53560.1 68416.m05914 chloroplast lumen common family protein 27 9.0
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 9.0
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 9.0
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 155 bits (375), Expect = 3e-38
Identities = 68/77 (88%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 113 bits (273), Expect = 8e-26
Identities = 47/63 (74%), Positives = 56/63 (88%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 155 bits (375), Expect = 3e-38
Identities = 68/77 (88%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 116 bits (280), Expect = 1e-26
Identities = 51/63 (80%), Positives = 56/63 (88%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (242), Expect = 5e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 155 bits (375), Expect = 3e-38
Identities = 68/77 (88%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 114 bits (274), Expect = 6e-26
Identities = 48/63 (76%), Positives = 57/63 (90%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (242), Expect = 5e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 154 bits (374), Expect = 5e-38
Identities = 67/77 (87%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 122 RKEAENCDCLQGFQVCH 138
Score = 118 bits (285), Expect = 3e-27
Identities = 52/64 (81%), Positives = 58/64 (90%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGD-SDLQLERINVYYNEASGGKY 243
MREI+H+Q GQCGNQIG+KFWE+I DEHGID TG Y GD +DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 244 VPRA 255
VPRA
Sbjct: 61 VPRA 64
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 208
Query: 689 YDI 697
YDI
Sbjct: 209 YDI 211
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 153 bits (371), Expect = 1e-37
Identities = 66/77 (85%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 62 PRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 121
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 122 RKEAENCDCLQGFQVCH 138
Score = 123 bits (296), Expect = 1e-28
Identities = 53/64 (82%), Positives = 60/64 (93%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKY 243
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+Y
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 244 VPRA 255
VPRA
Sbjct: 61 VPRA 64
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 150 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 208
Query: 689 YDI 697
YDI
Sbjct: 209 YDI 211
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 153 bits (370), Expect = 1e-37
Identities = 67/77 (87%), Positives = 75/77 (97%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR IL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 120 bits (289), Expect = 9e-28
Identities = 50/63 (79%), Positives = 58/63 (92%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YV
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (367), Expect = 3e-37
Identities = 66/77 (85%), Positives = 74/77 (96%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 119 bits (287), Expect = 2e-27
Identities = 51/63 (80%), Positives = 57/63 (90%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 151 bits (367), Expect = 3e-37
Identities = 66/77 (85%), Positives = 74/77 (96%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
Score = 119 bits (287), Expect = 2e-27
Identities = 51/63 (80%), Positives = 57/63 (90%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G++V
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (241), Expect = 6e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 151 bits (365), Expect = 6e-37
Identities = 67/77 (87%), Positives = 74/77 (96%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR +L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKESESCDCLQGFQLTH 476
RKE+E+ DCLQGFQ+ H
Sbjct: 121 RKEAENSDCLQGFQVCH 137
Score = 119 bits (286), Expect = 2e-27
Identities = 52/63 (82%), Positives = 57/63 (90%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYV 246
MREI+H+Q GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGGKYV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 247 PRA 255
PRA
Sbjct: 61 PRA 63
Score = 101 bits (242), Expect = 5e-22
Identities = 50/63 (79%), Positives = 55/63 (87%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
TLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE ++ +AL
Sbjct: 149 TLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD-NEAL 207
Query: 689 YDI 697
YDI
Sbjct: 208 YDI 210
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD V
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRV 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 240
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD V
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRV 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.0 bits (134), Expect = 6e-09
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 240
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E GK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 56.0 bits (129), Expect = 2e-08
Identities = 26/63 (41%), Positives = 42/63 (66%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD ++L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD ++L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD ++L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/73 (49%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD +
Sbjct: 63 PRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRI 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD ++L +A+
Sbjct: 151 SLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDL--QLERINVYYNEASGGK 240
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E GK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 79.4 bits (187), Expect = 2e-15
Identities = 34/73 (46%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
PR + +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+ +
Sbjct: 63 PRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERL 122
Query: 426 RKESESCDCLQGF 464
RK +++C LQGF
Sbjct: 123 RKLADNCTGLQGF 135
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGK 240
MREI+ + GQ G Q+G WE+ EHGI P G DS + + N +++E S G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 241 YVPRA 255
+VPRA
Sbjct: 61 HVPRA 65
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/63 (39%), Positives = 42/63 (66%)
Frame = +2
Query: 509 TLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDENLLASTTKAL 688
+LL+ ++ ++ + +++ PSP+VS VVEPYN+ LS H L+E+TD +L +A+
Sbjct: 151 SLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLD-NEAI 209
Query: 689 YDI 697
YDI
Sbjct: 210 YDI 212
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLD 419
PR +L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMD 120
Query: 420 VVRKESESCDCLQGFQLTH 476
++ +E++ D L+GF L H
Sbjct: 121 MIDREADGSDSLEGFVLCH 139
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +1
Query: 70 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 249
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 250 RA 255
RA
Sbjct: 63 RA 64
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 515 LISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTD 655
L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D
Sbjct: 153 LLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNAD 200
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Frame = +3
Query: 249 PR-ILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLD 419
PR +L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D
Sbjct: 62 PRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMD 120
Query: 420 VVRKESESCDCLQGFQLTH 476
++ +E++ D L+GF L H
Sbjct: 121 MIDREADGSDSLEGFVLCH 139
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +1
Query: 70 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVP 249
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A Y+P
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 250 RA 255
RA
Sbjct: 63 RA 64
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +2
Query: 515 LISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTD 655
L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D
Sbjct: 153 LLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNAD 200
>At3g24790.1 68416.m03111 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 379
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 461 LPTYTFPRWRHRVRYWTLLISKIREEYPDRIMN 559
L T+ P +R RYW L +R +YP++ +N
Sbjct: 278 LVTWALPIFRDPTRYWQLADPLLRGDYPEKSLN 310
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 67 MREIVHLQAGQCGNQIGAKFWEIISDEHGI 156
MREIV +Q G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 399 LVDSVLDVVRKESESCDCLQGF 464
+++SV VVRKE+E+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At2g28400.1 68415.m03451 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 66 NEGNRSSTGRPMW*PDWS*VLGDHLRRAR 152
++ ++++ P+ PDWS +LGD RR R
Sbjct: 68 SDSGKAASSLPVNVPDWSKILGDESRRQR 96
>At4g03350.1 68417.m00457 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 263
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/49 (28%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 548 RIMNTYSVVPSPKVSDTVVEPYNATLSV----HQLVENTDENLLASTTK 682
R+ N YS +P+ + + + Y+AT++V +Q+V+ T++ + T K
Sbjct: 115 RVHNVYSSLPAYSLDELLGPKYSATVTVGGRTNQVVQTTEQASTSGTAK 163
>At2g24200.1 68415.m02891 cytosol aminopeptidase identical to
cytosol aminopeptidase SP:P30184 from [Arabidopsis
thaliana]; contains Pfam profiles: PF00883 cytosol
aminopeptidase family catalytic domain, PF02789: cytosol
aminopeptidase family N-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -3
Query: 413 DRVNELSTL---CVVSLGPVVAGAGLSEDEVVR-TEDLSERSG 297
D++ +L+TL CV++LG +AG DE+ + SERSG
Sbjct: 393 DKIVDLATLTGACVIALGTSMAGIYTPSDELAKEVIAASERSG 435
>At4g02970.1 68417.m00404 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 270
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +2
Query: 524 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSV----HQLVENTDENLLASTTK 682
KI R+ N YS +P+ + + + Y+AT++V +Q+V+ T++ + T K
Sbjct: 108 KITRVMARRVHNIYSSLPAYSLDELLGPKYSATVAVGGRTNQVVQPTEQASTSGTAK 164
>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 305
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 176 MGTLTCSWSASMYTTMKPPAASTCPAHPRRLGARHH 283
MGTL C A + T K P S +HP+ ARH+
Sbjct: 78 MGTLICIMGAMLLTFYKGPELSNPHSHPQ---ARHN 110
>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 176 MGTLTCSWSASMYTTMKPPAASTCPAHPRRLGARHH 283
MGTL C A + T K P S +HP+ ARH+
Sbjct: 138 MGTLICIMGAMLLTFYKGPELSNPHSHPQ---ARHN 170
>At3g53560.1 68416.m05914 chloroplast lumen common family protein
Length = 340
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 445 AIAYRASNLHIPSVAAPGPVLDPPHLKDP*RVPRQNHEHILSSPL 579
A A +NLH+ S A P+ PP ++ V + E L L
Sbjct: 79 AAALLLANLHLKSPAIAAPIAPPPSVESKENVTLEEEERALDEHL 123
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 270 PSRRGCAGHVLAAGGFI--VVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSNLVTTL 97
P R+ H++ + F+ ++ L Q V +GT GV+ + D+LP S + V TL
Sbjct: 6 PLRKSPTSHMVFSSFFLSFLLVFSILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATL 63
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 73 EIVHLQAGQCGNQIGAKFWEIISD 144
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,571
Number of Sequences: 28952
Number of extensions: 327142
Number of successful extensions: 1085
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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