Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30262
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.57 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    25   0.76 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.3  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 684 HPWVRRHHGYSIQQAHVLAMTGVAFHHLVGGLESM 580
           H W+RR+   + Q  H    TG    H+VGGL  +
Sbjct: 181 HGWMRRNV-LNKQHVHFHDYTGSVVIHVVGGLTGL 214


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -1

Query: 688 FTSLGTTSPRLQHTASPCTCHDGGRISPSGWRARKH 581
           + SLG     ++    PC CH  G+     W  + H
Sbjct: 26  YVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGH 61


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
 Frame = +1

Query: 247 RALNSILTTHTTLEHSDCAFMVDNEAIYDICRR-NLDIERPTYTNLNRLIGQIVSSITAS 423
           RAL +I +  T+++ +   F +    +Y  C+R  +++ R   T  +      ++    +
Sbjct: 527 RALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSE---DAMTEALEA 583

Query: 424 LRFDGALNVDLTEFQTNLVPYPRIHFPLARTRQSSLPRRPTMNSFPSPRSQTHAFEPANQ 603
           +R  G ++++      NL PY  ++    R +       PT+       S  H  +  +Q
Sbjct: 584 VRL-GHMSINQAAIHYNL-PYSSLYGRFKRGKY----EEPTVGEISQDGSSPHFHQSPSQ 637


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 691 AFTSLGTTSPRLQHTASPCTCHDGGRISPSGWRA 590
           A  S  ++  +L+   +  +CH G + S +GW A
Sbjct: 476 AVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTA 509


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 691 AFTSLGTTSPRLQHTASPCTCHDGGRISPSGWRA 590
           A  S  ++  +L+   +  +CH G + S +GW A
Sbjct: 476 AVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTA 509


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 691 AFTSLGTTSPRLQHTASPCTCHDGGRISPSGWRA 590
           A  S  ++  +L+   +  +CH G + S +GW A
Sbjct: 476 AVVSKSSSINKLEDLRNKKSCHSGYKDSFAGWTA 509


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 63  ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 167
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,240
Number of Sequences: 438
Number of extensions: 4650
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)