Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30261
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 60 4e-10
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 42 1e-04
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 32 0.073
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 31 0.13
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 30 0.29
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 30 0.29
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 29 0.51
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 29 0.51
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 27 2.7
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 4.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 6.3
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 6.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 25 8.4
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 59.7 bits (138), Expect = 4e-10
Identities = 27/81 (33%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 LSYLWASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAE 180
L+Y + +P+ W +LA+ + S+G K+ALE +++LQ+W+ V++C+ L + A +
Sbjct: 421 LNYFYNLLMPSRWQLEAELAERFISVGATKSALEIFERLQMWDCVVMCHCSLNRQDLAVQ 480
Query: 181 VIQQQIDTNP-TVKLYCLLGD 240
VI+++++ +P L LLGD
Sbjct: 481 VIKRELENDPYDFLLRTLLGD 501
Score = 51.6 bits (118), Expect = 1e-07
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Frame = +2
Query: 509 WNNLAKVYVKQGD--KYRAYRALMEALRFNYDNWKLWDNVIIVSMD 640
WNNLA +K D K +A+ A+ + +++ YDNW++W+N +++S+D
Sbjct: 592 WNNLASAMLKAKDHTKEQAWHAMQQGIKYMYDNWRIWENYMLISVD 637
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/85 (27%), Positives = 42/85 (49%)
Frame = +3
Query: 255 KCYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAAL 434
K Y +AWE S + + AQR G + + + + + +S++IN + W G AAL
Sbjct: 507 KHYVEAWELSCKRFAPAQRSLGKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAAL 566
Query: 435 TTENWELSARAYRRYTYLNPNSFEA 509
+ ++ + A+ R +NP E+
Sbjct: 567 ELQKYDAAMEAFSRCLSINPEDGES 591
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 41.5 bits (93), Expect = 1e-04
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +3
Query: 207 SDSQAVLFAGRCYRRHKCYEKAWEF---SDHKSSRAQRHW---GNFLFDHKKYEECIPHY 368
+D+Q+ GRCY + Y KA+E + ++ R W G + +Y++ + Y
Sbjct: 582 TDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDALDAY 641
Query: 369 EKSVEINSIQESVWLRLGYAALTTENWELSA-RAYRRYTYLNPNS 500
+++ +N VW LG + N A AY+R L+P +
Sbjct: 642 SRAIRLNPYISEVWYDLGTLYESCHNQISDALDAYQRAAELDPTN 686
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/75 (22%), Positives = 34/75 (45%)
Frame = +3
Query: 261 YEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTT 440
YE A + + S A L + +++ I +Y+ ++ + Q +W LG+ L
Sbjct: 357 YESALRQNPY-SIPAMLQIATILRNREQFPLAIEYYQTILDCDPKQGEIWSALGHCYLMQ 415
Query: 441 ENWELSARAYRRYTY 485
++ + AYR+ Y
Sbjct: 416 DDLSRAYSAYRQALY 430
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 32.3 bits (70), Expect = 0.073
Identities = 23/97 (23%), Positives = 41/97 (42%)
Frame = +3
Query: 204 KSDSQAVLFAGRCYRRHKCYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVE 383
+ DS L + Y YE + + +SS+ Q G ++ K+YE + ++++
Sbjct: 409 EKDSANDLLKMQMYFLDVAYELS--LAKKRSSKVQAGLGIIMYMLKEYERSADCFRQALQ 466
Query: 384 INSIQESVWLRLGYAALTTENWELSARAYRRYTYLNP 494
E +W +LG A E + +Y R L P
Sbjct: 467 DEPSNEILWNKLGAALTNAEKNTEAVSSYNRAVSLQP 503
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 43 WRQQLADLYQSLGLVKAALEEYQKLQLWEDVI 138
W + L ++ GL A+LEEYQK WED +
Sbjct: 197 WEEHQKQL-KNAGLEPASLEEYQK--QWEDFL 225
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/64 (18%), Positives = 33/64 (51%)
Frame = +3
Query: 318 GNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPN 497
GN+ ++E+ + ++++++++N S W +G+ + +N + +YR +N
Sbjct: 345 GNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLAVDVNRK 404
Query: 498 SFEA 509
+ A
Sbjct: 405 DYRA 408
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/55 (21%), Positives = 29/55 (52%)
Frame = +3
Query: 339 KKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNSF 503
K + + I H++ ++ I+ + W LG A + + + +A+ R + L+P+ +
Sbjct: 664 KNFHKAIVHFQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILDPDDW 718
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQ 679
W+ L + Y + G A +A A + D+W + + + D +E S LS+
Sbjct: 687 WSGLGEAYARSGRYVSALKAFNRASILDPDDWYVKYFIATLEKDMGEYEVAVSTLSE 743
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 381 RPTFRNAVCILHTSCDRTENFPSGAVLGYFYDQKIPRLFRNIYVVCSIAQQTVQL 217
+P R V + +C +T + S LGYF + +P +F N C + ++VQL
Sbjct: 5 QPIRRKLVVVGDGACGKT-SLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQL 58
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 52 QLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQ 192
+ A Y+S+G + A+E Y+ +W + C +ILQ + ++I++
Sbjct: 948 EAAIAYESVGKISEAIEAYKSAGMWRE---CLSILQQTTNSEDLIRE 991
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +3
Query: 336 HKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500
+++YE+ + K++ +N + W LG L T + + ++R +NPN+
Sbjct: 478 NEEYEKSKTSFRKAIRVNVRHYNAWYGLGMVYLKTGRNDQADFHFQRAAEINPNN 532
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 333 DHKKYEECIPHYEKSVEINSIQESVWLRLGYAAL 434
+H+ I Y K+++INS +E W+R+ Y L
Sbjct: 408 NHQLIRSEIGEYCKTLDINSCREWFWIRIYYLYL 441
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 4.8
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 333 DHKKYEECIPHYEKSVE 383
D++ YE+ +P Y+KS+E
Sbjct: 122 DYQAYEKALPEYKKSIE 138
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.3
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +2
Query: 515 NLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQTFG-F 691
N KVYV R ++ +EAL+ N+ NV I ++DT E +S L FG
Sbjct: 234 NDKKVYVGHHVSRRERQSKVEALKANF------TNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 692 TELNL 706
T L+L
Sbjct: 288 TSLSL 292
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -1
Query: 566 LCTLD-TCLPVSRRLWRDCSSLE 501
L TLD TC+P S LW+D + LE
Sbjct: 116 LNTLDETCMPDSPLLWKDKTCLE 138
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 5/44 (11%)
Frame = -2
Query: 601 VVVIESESFHEGSVRSILVS----LFHVDFGEI-VPASNELGLR 485
V +E+ +FH+GS+R ++V+ + ++D G + V +S++L L+
Sbjct: 1326 VTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVLSSDQLPLQ 1369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,519
Number of Sequences: 5004
Number of extensions: 66777
Number of successful extensions: 223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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