Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30261
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0244 - 15715047-15715163,15716672-15716824,15718629-157187... 52 5e-07
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 35 0.058
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 34 0.10
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 33 0.23
05_02_0083 + 6450694-6450766,6451391-6451560,6451633-6451704,645... 31 1.2
12_02_1168 + 26651863-26651974,26652087-26652290,26652392-266525... 30 1.6
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779... 30 1.6
07_03_1185 + 24645963-24646316,24647990-24648226,24649027-246491... 29 5.0
11_04_0318 + 16336356-16336358,16337254-16337484,16337580-163376... 28 6.6
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 6.6
11_01_0675 - 5508815-5511277 28 6.6
11_01_0674 - 5502275-5502954,5503054-5504746 28 6.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 6.6
10_08_0277 - 16437023-16437304,16437687-16437833,16440169-164403... 28 8.7
06_01_0449 - 3176135-3176329,3176531-3177289,3177420-3177905,317... 28 8.7
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 28 8.7
>07_03_0244 -
15715047-15715163,15716672-15716824,15718629-15718748,
15718830-15719045,15719902-15719968,15720051-15720125,
15720607-15720698,15721053-15721154,15721642-15721711,
15721788-15721846,15721947-15722031,15722443-15722520,
15722627-15722725,15722819-15722910,15725572-15725661,
15725937-15725995,15727966-15728281,15728627-15728702,
15729998-15730308,15730577-15730634,15731082-15731092,
15731247-15731397,15733372-15733778
Length = 967
Score = 52.0 bits (119), Expect = 5e-07
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 25 LPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQQIDT 204
+P R++ +L S G+V AL+ ++ L+LW+++I CY +L A +I +I
Sbjct: 516 MPTIPALRKEYGELLISCGIVGEALDIFKDLELWDNLIYCYRLLGKVADATSLINARISV 575
Query: 205 NPT-VKLYCLLGDATDDINVTKK 270
P +L+C LGD T++ + KK
Sbjct: 576 TPNDPRLWCSLGDVTNNDDHYKK 598
Score = 39.5 bits (88), Expect = 0.003
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Frame = +2
Query: 389 FHTRKRLVEIGLRSAY--DRELG-AVGESVPSIHLPQP*LVRGWNNLAKVYVKQ----GD 547
FH+ + IG A D++L AV S+ + P WNN+A + + + G
Sbjct: 671 FHSASTWMVIGYLDAVKIDKDLEKAVDAFTRSVQI-DPENGEAWNNIACLLLSRHMIRGR 729
Query: 548 KYRAYRALMEALRFNYDNWKLWDNVIIVSMDT 643
A +A EA++F ++W++WDN V +DT
Sbjct: 730 SQAAVQAFKEAVKFKRNSWEVWDNYSKVLLDT 761
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 35.1 bits (77), Expect = 0.058
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = +3
Query: 342 KYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNSFEA 509
++E+ + ++++++++N S W +G+ + +N + AYRR +NP + A
Sbjct: 239 QHEKSVLYFQRALKLNRKYLSAWTLMGHEFVELKNTPAAIDAYRRAVDINPRDYRA 294
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 34.3 bits (75), Expect = 0.10
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)
Frame = +3
Query: 216 QAVLFAGRCYRRHKCYEKAWE-FS-----DHKSSRAQRHWGNFLFDHKKYEECIPHYEKS 377
QA G C+ K +E A + F D + + A G+ + YE I Y +
Sbjct: 494 QAWCAVGNCFALRKDHETALKNFQRAVQLDSRVAYAHTLCGHEYSALEDYENSIKLYRSA 553
Query: 378 VEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500
++++ + W LG L E +E + +RR +NP S
Sbjct: 554 LQVDERHYNAWYGLGVVYLRQEKFEFAEHHFRRAFQINPCS 594
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVW 410
E+ D K + +R GN LF +KY + + HY +++ N V+
Sbjct: 406 EYYDPKLADEEREKGNQLFKEQKYPDAVKHYTEAIRRNPKDPKVY 450
>05_02_0083 +
6450694-6450766,6451391-6451560,6451633-6451704,
6451893-6452043,6452709-6452817,6452906-6453023,
6453214-6453361,6453520-6453768,6454209-6454334,
6454474-6454574,6454728-6454802,6455160-6455219
Length = 483
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 312 HWGNFLFDHKKYEE---CIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYT 482
+W N F H K EE + K++EI++ + R G A L ++ + + +++
Sbjct: 48 YWANRAFAHTKLEEYGSAVQDASKAIEIDARYSKGYYRRGAAYLAMGKFKEALKDFQQVK 107
Query: 483 YLNPNSFEA 509
++PN +A
Sbjct: 108 RISPNDPDA 116
>12_02_1168 +
26651863-26651974,26652087-26652290,26652392-26652542,
26653355-26653399,26653528-26653598,26653678-26653763,
26653976-26654078,26654300-26654406
Length = 292
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +1
Query: 79 GLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCLLGDATDDIN 258
G +KA+ EEY+KL + + + LQ +A + ++ T L D +I
Sbjct: 200 GAIKASKEEYEKLPPYMKTLATWEELQ---EAISKLNSYFSSDKTQGNVALNQDDVGEIG 256
Query: 259 VTKKPGNFLII-----KVAEHSATGEIFCSITRS 345
+ +K ++L+I ++A + G IF +I +S
Sbjct: 257 LGRKGRSYLLILLRMNQLAMENIDGSIFYNIRKS 290
>03_02_0359 -
7788382-7788522,7788931-7789837,7791227-7791337,
7791437-7791507,7791582-7791659,7792564-7792770,
7792867-7793046,7793249-7793471,7794133-7794453,
7794538-7795109
Length = 936
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 474 RYTYLNPNSFEAGTISPKST*NRETSIERTEPSWKLSDSITTT 602
RY N +S+ +G +S S E S R+ SW+ ++TT
Sbjct: 806 RYVAGNRSSYHSGDVSDGSVEELERSYNRSSSSWRRPQDLSTT 848
>07_03_1185 +
24645963-24646316,24647990-24648226,24649027-24649170,
24649296-24649427,24649524-24649811
Length = 384
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 133 VIVCYTILQLRHKAAEVIQQQIDTNPTVK 219
V +C +L+ H ++ QQQ+DTN T++
Sbjct: 225 VFLCAAMLKNGHSTLDMFQQQMDTNGTLQ 253
>11_04_0318 +
16336356-16336358,16337254-16337484,16337580-16337654,
16337741-16337839,16339010-16339121,16339586-16339713,
16340022-16340141,16340967-16341047,16341460-16341537,
16341616-16341708,16341880-16341934,16342795-16342871,
16343008-16343079,16343159-16343242,16343620-16343739,
16343824-16343892,16344721-16344798,16345684-16345822,
16345990-16346154,16346239-16346384,16346501-16346680,
16346834-16346922,16346997-16347028,16347120-16347226
Length = 810
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 97 VLPSRAPGSGTGRPAAGATSMTRGDRSPRDMI 2
VLPS GS + R A G +++ GD+ P ++
Sbjct: 359 VLPSLGVGSLSAREAEGRANVSTGDKEPHKLL 390
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 LSYLWASGLPASWTWRQQLADLYQSLGL-VKAALEEYQKLQL 123
+++L SG+P W QQ+ + + V+ A+E Y++ L
Sbjct: 1078 INHLKISGVPRRLKWHQQIGSMISEFRIYVQEAIERYERYDL 1119
>11_01_0675 - 5508815-5511277
Length = 820
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 637 HTHNNYIIPQLPVVVIESESFHEGSVRSILVSLFHVDF 524
+T N+Y PV I HEGSV+++L H DF
Sbjct: 728 YTSNHYHFDYFPVQAISK--LHEGSVQNLLDPELHGDF 763
>11_01_0674 - 5502275-5502954,5503054-5504746
Length = 790
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -2
Query: 637 HTHNNYIIPQLPVVVIESESFHEGSVRSILVSLFHVDF 524
+T N+Y PV I HEGSV+++L H DF
Sbjct: 703 YTSNHYHFDYFPVQAISK--LHEGSVQNLLDPELHGDF 738
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 172 AAEVIQQQIDTNPTVK--LYCLLGDAT-DDINVTKKPGNFLIIKVAEHSATGEIFCSITR 342
AA ++ P +K + L GDA+ DD+N KPG ++ +G I R
Sbjct: 1668 AAAAVRHSAKRRPKMKQIVRALEGDASLDDLNEGVKPGQSMMFSTGSEYDSGNYASDINR 1727
Query: 343 SMKNAY 360
K A+
Sbjct: 1728 LRKVAF 1733
>10_08_0277 -
16437023-16437304,16437687-16437833,16440169-16440342,
16441192-16441266,16441653-16441805,16442488-16442751
Length = 364
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 342 KYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500
K ++ I +EK+VE+ + W LG A ++ + + +A+ +PN+
Sbjct: 285 KLDKSIQQFEKAVELQPGYVTAWNNLGDAYEQKKDLKSALKAFEEVLLFDPNN 337
>06_01_0449 -
3176135-3176329,3176531-3177289,3177420-3177905,
3178302-3178421,3178637-3178703,3178784-3179007,
3179149-3179234,3179936-3180509
Length = 836
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 285 DHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389
D +++ R GN F K+Y+E HY ++++ N
Sbjct: 181 DQEAADHHRDRGNDFFKQKRYQEAAMHYTEAMKKN 215
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 258 CYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESV 407
C EK + S Q+HW N + + +P + S+ N I+ SV
Sbjct: 850 CEEKKSRKKEQSQSVNQKHWNNTAESSQIRQGILPFAQLSLSFNDIKYSV 899
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,361,229
Number of Sequences: 37544
Number of extensions: 433931
Number of successful extensions: 1640
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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