Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30261
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) 44 1e-04
SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07) 37 0.015
SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17) 34 0.14
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 34 0.14
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 33 0.31
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5) 32 0.55
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37) 29 2.9
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 29 5.1
SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31) 29 5.1
SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4) 29 5.1
SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 28 6.7
SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10) 28 6.7
SB_58247| Best HMM Match : TPR_1 (HMM E-Value=1.2e-19) 28 8.9
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21842| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07)
Length = 1002
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1
Query: 46 RQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEV 183
+++LA + SL K+AL+ + +L+LWEDVI CY IL K++ +
Sbjct: 162 KRELAQVLVSLHAFKSALDVFLRLELWEDVISCYQILGKHEKSSRI 207
>SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)
Length = 374
Score = 37.1 bits (82), Expect = 0.015
Identities = 13/55 (23%), Positives = 31/55 (56%)
Frame = +3
Query: 312 HWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRR 476
HWGN+ +E+ I ++++++++N S W +G+ + +N + +YR+
Sbjct: 161 HWGNYYSLQGLHEKAIVYFQRALKLNRQYTSAWTLMGHEFMELKNPTAAIESYRK 215
>SB_38446| Best HMM Match : TPR_1 (HMM E-Value=9.5e-17)
Length = 147
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 222 VLFAGRCYRRHKCYEKAWEFSDHKSSRAQRHW--GNFLFDHKKYEECIPHYEKSVEINSI 395
+L + +R + E A+E H + H+ GN L K+++E H+ +++E+N +
Sbjct: 32 ILLLDKTDKRTEGIELAYEALKHIPDESSIHFNLGNMLGQEKRFKEAEKHFLRALELNPV 91
Query: 396 QESVWLRLG 422
Q + LG
Sbjct: 92 QPEIRGNLG 100
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 222 VLFAGRCYRRHKCYEKAWEFSDHKSSRAQRHW--GNFLFDHKKYEECIPHYEKSVEINSI 395
+L + +R + E A+E H + H+ GN L K+++E H+ +++E+N +
Sbjct: 572 ILLLDKTDKRTEGIELAYEALKHIPDESSIHFNLGNMLGQEKRFKEAEKHFLRALELNPV 631
Query: 396 QESVWLRLG 422
Q + LG
Sbjct: 632 QPEIRGNLG 640
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 354 CIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPNSFEAGT 515
C Y +S+++ + W+ LG + T+ + + AY L PNS +A T
Sbjct: 696 CEKFYRQSIKLRPHYVTAWVNLGLVLVNTDREKEAESAYNIALSLKPNSADANT 749
>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
Length = 529
Score = 31.9 bits (69), Expect = 0.55
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 109 QKLQLW-EDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCLLGDATDDINVTKKPGNF 282
QKL W E+V V ++ V+ Q+ T PT K + ++ DAT DI V K F
Sbjct: 111 QKLDEWLENVPVAVRAQEIWDNIQAVLSQKKFTTPTSKSFKIVRDATKDILVPAKMAAF 169
>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
Length = 1632
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/75 (21%), Positives = 33/75 (44%)
Frame = +3
Query: 285 DHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSAR 464
D S A GN K+++ I ++++V+++ + LG+ + TE + +
Sbjct: 1363 DRSSPEAWCATGNCFSLQKEHDTAIKFFQRAVQVDQACTYAYTLLGHEYVLTEELDRAMS 1422
Query: 465 AYRRYTYLNPNSFEA 509
YR +P + A
Sbjct: 1423 CYRMAIRSDPRHYNA 1437
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 429 ALTTENWELSARAYRRYTYL--NPNSFEAGTISPKST*NRETSIERTEPSWKLSDSITTT 602
A TE +++ + +L NPN+ TI+P + + + ++P+W +S TTT
Sbjct: 331 APATEGTKINTTVTSKPAWLTQNPNTTTTTTIAPAAEGTKSNTTVTSKPAWLTQNSNTTT 390
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 556 SILVSLFHVDFGEIVPASNELGLR*VYRRYALADSSQF 443
S+L LF FG+ P+S LGLR + LAD+ F
Sbjct: 532 SLLTGLFATKFGKDSPSSVALGLRMEEMIFNLADTHMF 569
>SB_31490| Best HMM Match : Aa_trans (HMM E-Value=4.9e-31)
Length = 974
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -1
Query: 551 TCLPVSRRLWRDCSSLERVRVEVGVSTVRSRRQLPVLCRKRCVTQSQ 411
TCL VS L R S V V V VS LPV C + CV S+
Sbjct: 131 TCLSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 177
>SB_10493| Best HMM Match : Keratin_B2 (HMM E-Value=3.4)
Length = 119
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/47 (42%), Positives = 22/47 (46%)
Frame = -1
Query: 551 TCLPVSRRLWRDCSSLERVRVEVGVSTVRSRRQLPVLCRKRCVTQSQ 411
TCL VS L R S V V V VS LPV C + CV S+
Sbjct: 61 TCLSVSVFLSRVNLSRVCVLVSVSVSVTCVNLYLPVTCLRACVCLSR 107
>SB_40957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 689 IQKSVTAANNVPQSVGCPYSQ*LHYPTASSCRN 591
+ +S T + P+ V C Q L YPTA+ C +
Sbjct: 214 VSQSKTFLHPTPEQVACNAYQKLPYPTANGCNS 246
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = -3
Query: 327 ENFPSGAVLGYFYDQKIPRLFRNIYVVCSIAQQTVQLDCRI 205
ENF VLG +++ + ++F +I +IA+ V + CR+
Sbjct: 178 ENFVMNRVLGDYFETLLYKIFVSIDEHTNIAENAVSVYCRL 218
>SB_40767| Best HMM Match : TPR_2 (HMM E-Value=3.2e-10)
Length = 452
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 300 RAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRY 479
R R GN K+Y I Y KS+ + I W + A ++ +E S +
Sbjct: 285 RYYRSEGNKKMISKEYRTAIDLYNKSILASPINYFSWCQRATAFISLNKYEESLLDFEEC 344
Query: 480 TYLNP 494
LNP
Sbjct: 345 IKLNP 349
>SB_58247| Best HMM Match : TPR_1 (HMM E-Value=1.2e-19)
Length = 284
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLH 649
W N+ V + GD AY+ AL N D+ + ++N+ ++ M H
Sbjct: 169 WYNIGHVALGIGDSALAYQCFRLALAANNDHSEAYNNLGVLEMRKGH 215
>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +3
Query: 15 GERSPRVMDVAPAAGRPVPEPGAREGSTR 101
G R+P AP GR P PG R S R
Sbjct: 160 GRRTPFACRRAPTPGRRTPTPGRRASSRR 188
>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Frame = +3
Query: 297 SRAQRHWGNFLFDHKKYEECIPHYEKSVEI------NSIQESVWLRLGYAALTTENWELS 458
++A GN F+H KYE+ + +Y+ ++ + S Q +L +G A + +E +
Sbjct: 468 AKAYHGMGNVHFNHGKYEDALNNYQHALSLFQKTGDESGQGDAYLGMGDAHRSQGKYEDA 527
Query: 459 ARAYRR 476
Y+R
Sbjct: 528 MNNYQR 533
>SB_21842| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 27.9 bits (59), Expect = 8.9
Identities = 24/79 (30%), Positives = 38/79 (48%)
Frame = +1
Query: 253 INVTKKPGNFLIIKVAEHSATGEIFCSITRSMKNAYRITKSRSKLIPYKKAFG*DWVTQR 432
+NVT+ ++ K+ A+G +F S+T R+ K SKL P +KA G D V +
Sbjct: 96 LNVTEDRVQKVLSKLHPRKASGPVFLSVTED-----RVQKVLSKLHP-RKASGPDNVPSK 149
Query: 433 LRQRTGSCRRERTVDTPTS 489
+ + E+ D P S
Sbjct: 150 I------VKEEKQYDEPAS 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,751,919
Number of Sequences: 59808
Number of extensions: 507428
Number of successful extensions: 1758
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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