Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30261
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.9  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.8  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   9.0  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   9.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 11  SGRAVSPRHGRGASSWPTC 67
           S   V P +G G   WP C
Sbjct: 270 SNDKVHPLYGHGVCKWPGC 288


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 432 LTTENWELSARAYRRYTYLNP 494
           L  ENW+L A  +  Y Y  P
Sbjct: 359 LLDENWDLIAPYFLDYNYTIP 379


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 432 LTTENWELSARAYRRYTYLNP 494
           L  ENW+L A  +  Y Y  P
Sbjct: 359 LLDENWDLIAPYFLDYNYTIP 379


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 73  SLGLVKAALEEYQKLQLWED 132
           SL LV AAL    KLQ W +
Sbjct: 86  SLQLVLAALYPPNKLQQWNE 105


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 73  SLGLVKAALEEYQKLQLWED 132
           SL LV AAL    KLQ W +
Sbjct: 101 SLQLVLAALYPPNKLQQWNE 120


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 533 VKQGDKYRAYRALMEALR 586
           VKQ ++Y AYR L   +R
Sbjct: 392 VKQVEEYMAYRKLPREMR 409


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 533 VKQGDKYRAYRALMEALR 586
           VKQ ++Y AYR L   +R
Sbjct: 360 VKQVEEYMAYRKLPREMR 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,913
Number of Sequences: 438
Number of extensions: 5400
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)