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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30261
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    52   4e-07
At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi...    50   2e-06
At3g48150.1 68416.m05251 cell division cycle family protein / CD...    38   0.009
At1g12270.1 68414.m01419 stress-inducible protein, putative simi...    33   0.19 
At4g12400.1 68417.m01960 stress-inducible protein, putative simi...    31   0.59 
At3g16320.1 68416.m02061 cell division cycle family protein / CD...    31   1.0  
At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containi...    30   1.8  
At2g20000.1 68415.m02338 cell division cycle family protein / CD...    30   1.8  
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p...    29   3.2  
At1g18580.1 68414.m02317 glycosyltransferase family protein 8 co...    29   3.2  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    29   4.2  
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    29   4.2  
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    28   5.5  
At3g01100.1 68416.m00015 early-responsive to dehydration protein...    28   5.5  
At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi...    28   5.5  
At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related c...    28   7.3  
At1g06180.1 68414.m00650 myb family transcription factor identic...    28   7.3  
At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / di...    27   9.6  
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    27   9.6  
At3g04830.2 68416.m00524 expressed protein                             27   9.6  
At3g04830.1 68416.m00523 expressed protein                             27   9.6  
At1g22730.1 68414.m02840 MA3 domain-containing protein contains ...    27   9.6  

>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +1

Query: 13  WASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQ 192
           +A  LP     R++  +L  S GLV  A+  ++ L+LW+++I CY +L  +  A ++I  
Sbjct: 478 YAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAAVDLINA 537

Query: 193 QIDTNPT-VKLYCLLGDAT 246
           ++   P   +L+C LGD T
Sbjct: 538 RLLERPNDPRLWCSLGDVT 556



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 45/84 (53%)
 Frame = +3

Query: 258 CYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALT 437
           CYEKA E S+ KS RA+R      ++   +E+    +E ++ +NS+    W  LG AAL 
Sbjct: 561 CYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALK 620

Query: 438 TENWELSARAYRRYTYLNPNSFEA 509
             + + +  A+     L+P++ EA
Sbjct: 621 ARDVQKALDAFTFAVQLDPDNGEA 644



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 17/57 (29%), Positives = 34/57 (59%)
 Frame = +2

Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQ 679
           WNN+A +++ +     ++ A  EAL+F  D+W++W+N   V+MD  + +  +  + Q
Sbjct: 645 WNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFEAIQQ 701



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 506 GWNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSM 637
           GW  L    +K  D  +A  A   A++ + DN + W+N+  + M
Sbjct: 610 GWFALGAAALKARDVQKALDAFTFAVQLDPDNGEAWNNIACLHM 653


>At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 856

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 46/84 (54%)
 Frame = +3

Query: 258 CYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALT 437
           CYEKA E S+ KS RA+R      ++   +E+    +E ++ +NS+    W  LG AAL 
Sbjct: 532 CYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALK 591

Query: 438 TENWELSARAYRRYTYLNPNSFEA 509
             + + +  A+    +L+P+++ A
Sbjct: 592 ARDLQKALDAFTLAVHLDPDNWLA 615



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 13  WASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQ 192
           +A  LP     R++  +L  S G V  A+  ++ L+LW+++I CY  +  +  A ++I  
Sbjct: 449 YAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSAAVDLINA 508

Query: 193 QIDTNPT-VKLYCLLGDAT 246
           ++   P   +L+C LGD T
Sbjct: 509 RLLERPNDPRLWCSLGDVT 527



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 35/63 (55%)
 Frame = +2

Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQTFG 688
           WNN+A +++ +     ++ A  E L+ N D+W++W+N   V+MD  + +  +  + Q   
Sbjct: 616 WNNIASLHMIKKKSKESFIAFKEVLKLNRDSWQIWENFSHVAMDVGNTDQAFEAIQQIMR 675

Query: 689 FTE 697
            T+
Sbjct: 676 LTQ 678



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 506 GWNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSM 637
           GW  L    +K  D  +A  A   A+  + DNW  W+N+  + M
Sbjct: 581 GWFALGAAALKARDLQKALDAFTLAVHLDPDNWLAWNNIASLHM 624


>At3g48150.1 68416.m05251 cell division cycle family protein / CDC
           family protein similar to cell division cycle protein 23
           [Homo sapiens] GI:3283051, anaphase-promoting complex
           subunit 8 [Homo sapiens] GI:6180017; contains Pfam
           profile PF00515: TPR Domain
          Length = 579

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 15/64 (23%), Positives = 34/64 (53%)
 Frame = +3

Query: 318 GNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPN 497
           GN+     ++E+ + ++ +++++N    S W  +G+  +  +N   +  AYRR   +NP 
Sbjct: 346 GNYYSLKGQHEKAVMYFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPT 405

Query: 498 SFEA 509
            + A
Sbjct: 406 DYRA 409


>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 572

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 264 EKAWE---FSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389
           +K WE   + D K    +R  GN  F  +KY E I HY ++++ N
Sbjct: 369 KKEWEQKQYFDPKLGDEEREKGNDFFKEQKYPEAIKHYTEAIKRN 413


>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 530

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389
           E+ D   +  +R  GN  F  +KY E + HY ++++ N
Sbjct: 362 EYFDPTIAEEEREKGNGFFKEQKYPEAVKHYSEAIKRN 399



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 261 YEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVE 383
           Y KA E  D   S        +L +  KYEECI   +K+VE
Sbjct: 253 YTKAMELDDEDISYLTNRAAVYL-EMGKYEECIEDCDKAVE 292


>At3g16320.1 68416.m02061 cell division cycle family protein / CDC
           family protein similar to SP|P30260|CC27_HUMAN Protein
           CDC27Hs (Cell division cycle protein 27 homolog) Homo
           sapiens, C-terminus similar to C-term of cell division
           control protein 27 SP:P38042 (Saccharomyces cerevisiae);
           contains Pfam profile PF00515 TPR Domain
          Length = 727

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
 Frame = +3

Query: 234 GRCYRRHKCYEKAWEFSDHKSSRAQRH-WGNFLFDHK-----KYEECIPHYEKSVEINSI 395
           G CY   K ++ A +         +R  + + L  H+     ++E+    Y K++ I++ 
Sbjct: 506 GNCYSLRKDHDTALKMFQRAIQLNERFTYAHTLCGHEFAALEEFEDAERCYRKALGIDTR 565

Query: 396 QESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500
             + W  LG   L  E +E +   ++    +NP S
Sbjct: 566 HYNAWYGLGMTYLRQEKFEFAQHQFQLALQINPRS 600


>At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 601

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = +1

Query: 7   YLWASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQL-----WEDVIVCYTILQLRHK 171
           YL+ +GLP +      L D+Y  +G ++ A   + ++       W  +I  +    L +K
Sbjct: 242 YLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANK 301

Query: 172 AAEVIQQQIDTNPTVKLYCLLG 237
           A E + +         L  L+G
Sbjct: 302 AFEAVVEMQSLGFQPDLVTLVG 323


>At2g20000.1 68415.m02338 cell division cycle family protein / CDC
           family protein low similarity to SP|P30260|CC27_HUMAN
           Protein CDC27Hs (Cell division cycle protein 27 homolog)
           Homo sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 744

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
 Frame = +3

Query: 234 GRCYRRHKCYEKAWE-FSDHKSSRAQRHWGNFLFDHK-----KYEECIPHYEKSVEINSI 395
           G CY   K +E A + F        +  + + L  H+      +E  +  Y+ ++ +++ 
Sbjct: 525 GNCYSLQKDHETALKNFLRAVQLNPRFAYAHTLCGHEYTTLEDFENGMKSYQNALRVDTR 584

Query: 396 QESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500
             + W  LG   L  E  E S   +R    +NP+S
Sbjct: 585 HYNAWYGLGMIYLRQEKLEFSEHHFRMAFLINPSS 619


>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
           putative similar to SP|P53042 Serine/threonine protein
           phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
           T) (PPT) {Rattus norvegicus}; contains Pfam profiles
           PF00149: Ser/Thr protein phosphatase, PF00515: TPR
           Domain
          Length = 484

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENW 449
           E SD   +   +   N  F   KY   I  Y K++E+NS     W    +A    E +
Sbjct: 6   ENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEY 63


>At1g18580.1 68414.m02317 glycosyltransferase family protein 8
           contains Pfam profile PF01501: Glycosyl transferase
           family 8; protein sequence is truncated due to a
           frameshift.  This could be a pseudogene or a sequencing
           error may exist.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 375 SVEINSIQESVWLRLGYAALTTENWELSARAY 470
           ++EI S++E  WL   Y+ +  +  +  ARAY
Sbjct: 286 AIEIRSVEEFSWLNASYSPVVKQLLDTDARAY 317


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +2

Query: 410 VEIGLRSAYDRELGAVGESVPSI--HLPQP*LVRGWNNLAKVYVKQGDKYRAYRALMEAL 583
           V   L S YD++ G+  + V  +   +PQ   V  WN +    VK+G  ++A+    E  
Sbjct: 218 VSNSLMSLYDKDSGSSCDDVLKLFDEIPQRD-VASWNTVVSSLVKEGKSHKAFDLFYEMN 276

Query: 584 R---FNYDNWKL 610
           R   F  D++ L
Sbjct: 277 RVEGFGVDSFTL 288


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389
           E+ D      +R  GN  F  +KY + + HY ++++ N
Sbjct: 375 EYYDPNIGDEEREKGNDFFKEQKYPDAVRHYTEAIKRN 412


>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
           putative similar to O-GlcNAc transferase, Homo sapiens
           [SP|O15294], Rattus norvegicus [SP|P56558]; contains
           Pfam profile PF00515: TPR Domain; identical to cDNA
           GI:18139886
          Length = 977

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 488 QP*LVRGWNNLAKVYVKQGDKYRAYRALMEALR 586
           QP     W+NLA ++++ GD  RA +   EA++
Sbjct: 219 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 251


>At3g01100.1 68416.m00015 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 703

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 201 HKSDSQAVLFAGRCYRRHKCYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSV 380
           H++D   VL         K Y+K         SR +  WG FL       + + HY+K +
Sbjct: 227 HRTDKLKVLMNDA----EKLYKKLTRVKSGSISRQKSRWGGFLGMFGNNVDVVDHYQKKL 282

Query: 381 E 383
           +
Sbjct: 283 D 283


>At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing
           protein low similarity to CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 510

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 19  SGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQQI 198
           + L  ++ W Q++ D Y+++  ++  L+         D+I+ + I   R K A  + Q +
Sbjct: 341 NALVGAYCWSQRMEDAYKTVDEMR--LKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM 398

Query: 199 DTNPTVKLY 225
              PTV  Y
Sbjct: 399 SCEPTVSTY 407


>At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related
           contains weak similarity to Rho-GTPase-activating
           protein 1 (GTPase-activating protein rhoOGAP)
           (Rho-related small GTPase protein activator) (CDC42
           GTPase-activating protein) (p50-rhoGAP)
           (Swiss-Prot:Q07960) [Homo sapiens]
          Length = 202

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 363 AVCILHTSCDRTENFPSGAVLGYFYD 286
           AV  +HT   R+ENFP  + L   YD
Sbjct: 68  AVLYVHTGVQRSENFPGISALRAIYD 93


>At1g06180.1 68414.m00650 myb family transcription factor identical
           to  GB:CAA90748 GI:1263093 from [Arabidopsis
           thaliana];contains PFAM profile:PF00249
          Length = 246

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
 Frame = +3

Query: 42  VAPAAGRPVPEPGAREGSTRGVSETTTLGRCYSLLHYTPTEA*GSRSYTTTD*HKSDSQA 221
           V+  A      P  +  S+  +S  TTLG    + +     A  S            S+ 
Sbjct: 129 VSTTAAEMPTSPQQQSSSSADISAITTLGNNNDISNSNKDSATSSEDVLAIIDESFWSEV 188

Query: 222 VLFAGRCYRRHKCYEKA--WEFSDHKSSRAQRHWGNFLFDHKKYEECI 359
           VL         K  +K   WE S  ++ +   H   F FDH     CI
Sbjct: 189 VLMDCDISGNEKNEKKIENWEGSLDRNDKGYNHDMEFWFDHLTSSSCI 236


>At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family /
           dihydrokaempferol 4-reductase family similar to
           dihydroflavonol 4-reductase (Rosa hybrid cultivar,
           GI:1332411), CPRD14 protein (Vigna unguiculata,
           GI:1854445)
          Length = 326

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  ASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWE 129
           ASG  ASW  ++ L + Y+ +G V+    E +   LW+
Sbjct: 13  ASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWK 50


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 336 HKKYEECIPHYEKSVEINSIQESV 407
           HK+ E  +   +K VEIN IQES+
Sbjct: 287 HKRLELTLELVKKEVEINKIQESI 310


>At3g04830.2 68416.m00524 expressed protein
          Length = 299

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 WEDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCL 231
           W ++   Y  LQ+  +AA   ++ I T PT+ LY L
Sbjct: 165 WRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHL 200


>At3g04830.1 68416.m00523 expressed protein
          Length = 303

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 124 WEDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCL 231
           W ++   Y  LQ+  +AA   ++ I T PT+ LY L
Sbjct: 169 WRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHL 204


>At1g22730.1 68414.m02840 MA3 domain-containing protein contains
           Pfam profile PF02847: MA3 domain; low similarity to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564
          Length = 693

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +2

Query: 512 NNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMD 640
           N+L K YV  GDK  A+R + + L+  + + ++    +I++M+
Sbjct: 260 NDLLKEYVMSGDKKEAFRCI-KGLKVPFFHHEIVKRALIMAME 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,279,548
Number of Sequences: 28952
Number of extensions: 345841
Number of successful extensions: 1148
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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