BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30261 (728 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi... 52 4e-07 At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi... 50 2e-06 At3g48150.1 68416.m05251 cell division cycle family protein / CD... 38 0.009 At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 33 0.19 At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 31 0.59 At3g16320.1 68416.m02061 cell division cycle family protein / CD... 31 1.0 At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containi... 30 1.8 At2g20000.1 68415.m02338 cell division cycle family protein / CD... 30 1.8 At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 29 3.2 At1g18580.1 68414.m02317 glycosyltransferase family protein 8 co... 29 3.2 At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 29 4.2 At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 29 4.2 At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera... 28 5.5 At3g01100.1 68416.m00015 early-responsive to dehydration protein... 28 5.5 At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containi... 28 5.5 At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related c... 28 7.3 At1g06180.1 68414.m00650 myb family transcription factor identic... 28 7.3 At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / di... 27 9.6 At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 27 9.6 At3g04830.2 68416.m00524 expressed protein 27 9.6 At3g04830.1 68416.m00523 expressed protein 27 9.6 At1g22730.1 68414.m02840 MA3 domain-containing protein contains ... 27 9.6 >At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 899 Score = 52.0 bits (119), Expect = 4e-07 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Frame = +1 Query: 13 WASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQ 192 +A LP R++ +L S GLV A+ ++ L+LW+++I CY +L + A ++I Sbjct: 478 YAVHLPTIPALRKEYGELLVSCGLVGEAITIFESLELWDNLIYCYCLLGKKSAAVDLINA 537 Query: 193 QIDTNPT-VKLYCLLGDAT 246 ++ P +L+C LGD T Sbjct: 538 RLLERPNDPRLWCSLGDVT 556 Score = 49.6 bits (113), Expect = 2e-06 Identities = 27/84 (32%), Positives = 45/84 (53%) Frame = +3 Query: 258 CYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALT 437 CYEKA E S+ KS RA+R ++ +E+ +E ++ +NS+ W LG AAL Sbjct: 561 CYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKMLWEAAMALNSLYPDGWFALGAAALK 620 Query: 438 TENWELSARAYRRYTYLNPNSFEA 509 + + + A+ L+P++ EA Sbjct: 621 ARDVQKALDAFTFAVQLDPDNGEA 644 Score = 44.8 bits (101), Expect = 6e-05 Identities = 17/57 (29%), Positives = 34/57 (59%) Frame = +2 Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQ 679 WNN+A +++ + ++ A EAL+F D+W++W+N V+MD + + + + Q Sbjct: 645 WNNIACLHMIKKKSKESFIAFKEALKFKRDSWQMWENFSHVAMDVGNIDQAFEAIQQ 701 Score = 28.3 bits (60), Expect = 5.5 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = +2 Query: 506 GWNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSM 637 GW L +K D +A A A++ + DN + W+N+ + M Sbjct: 610 GWFALGAAALKARDVQKALDAFTFAVQLDPDNGEAWNNIACLHM 653 >At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 856 Score = 50.0 bits (114), Expect = 2e-06 Identities = 26/84 (30%), Positives = 46/84 (54%) Frame = +3 Query: 258 CYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALT 437 CYEKA E S+ KS RA+R ++ +E+ +E ++ +NS+ W LG AAL Sbjct: 532 CYEKALEVSNDKSVRAKRALARSAYNRGDFEKSKILWEAAMALNSLYSDGWFALGAAALK 591 Query: 438 TENWELSARAYRRYTYLNPNSFEA 509 + + + A+ +L+P+++ A Sbjct: 592 ARDLQKALDAFTLAVHLDPDNWLA 615 Score = 47.2 bits (107), Expect = 1e-05 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = +1 Query: 13 WASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQ 192 +A LP R++ +L S G V A+ ++ L+LW+++I CY + + A ++I Sbjct: 449 YAVYLPTIPALRKEYGELLVSCGYVGEAITIFESLELWDNLIYCYCSMGKKSAAVDLINA 508 Query: 193 QIDTNPT-VKLYCLLGDAT 246 ++ P +L+C LGD T Sbjct: 509 RLLERPNDPRLWCSLGDVT 527 Score = 45.2 bits (102), Expect = 4e-05 Identities = 17/63 (26%), Positives = 35/63 (55%) Frame = +2 Query: 509 WNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMDTLHFEGRYSRLSQTFG 688 WNN+A +++ + ++ A E L+ N D+W++W+N V+MD + + + + Q Sbjct: 616 WNNIASLHMIKKKSKESFIAFKEVLKLNRDSWQIWENFSHVAMDVGNTDQAFEAIQQIMR 675 Query: 689 FTE 697 T+ Sbjct: 676 LTQ 678 Score = 31.5 bits (68), Expect = 0.59 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +2 Query: 506 GWNNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSM 637 GW L +K D +A A A+ + DNW W+N+ + M Sbjct: 581 GWFALGAAALKARDLQKALDAFTLAVHLDPDNWLAWNNIASLHM 624 >At3g48150.1 68416.m05251 cell division cycle family protein / CDC family protein similar to cell division cycle protein 23 [Homo sapiens] GI:3283051, anaphase-promoting complex subunit 8 [Homo sapiens] GI:6180017; contains Pfam profile PF00515: TPR Domain Length = 579 Score = 37.5 bits (83), Expect = 0.009 Identities = 15/64 (23%), Positives = 34/64 (53%) Frame = +3 Query: 318 GNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENWELSARAYRRYTYLNPN 497 GN+ ++E+ + ++ +++++N S W +G+ + +N + AYRR +NP Sbjct: 346 GNYYSLKGQHEKAVMYFRRALKLNKKYLSAWTLMGHEYVEMKNTPAAIDAYRRAVDINPT 405 Query: 498 SFEA 509 + A Sbjct: 406 DYRA 409 >At1g12270.1 68414.m01419 stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI:872116; contains Pfam profile PF00515 TPR Domain Length = 572 Score = 33.1 bits (72), Expect = 0.19 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +3 Query: 264 EKAWE---FSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389 +K WE + D K +R GN F +KY E I HY ++++ N Sbjct: 369 KKEWEQKQYFDPKLGDEEREKGNDFFKEQKYPEAIKHYTEAIKRN 413 >At4g12400.1 68417.m01960 stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI:872116; contains Pfam profile PF00515 TPR Domain Length = 530 Score = 31.5 bits (68), Expect = 0.59 Identities = 12/38 (31%), Positives = 21/38 (55%) Frame = +3 Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389 E+ D + +R GN F +KY E + HY ++++ N Sbjct: 362 EYFDPTIAEEEREKGNGFFKEQKYPEAVKHYSEAIKRN 399 Score = 27.5 bits (58), Expect = 9.6 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 261 YEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVE 383 Y KA E D S +L + KYEECI +K+VE Sbjct: 253 YTKAMELDDEDISYLTNRAAVYL-EMGKYEECIEDCDKAVE 292 >At3g16320.1 68416.m02061 cell division cycle family protein / CDC family protein similar to SP|P30260|CC27_HUMAN Protein CDC27Hs (Cell division cycle protein 27 homolog) Homo sapiens, C-terminus similar to C-term of cell division control protein 27 SP:P38042 (Saccharomyces cerevisiae); contains Pfam profile PF00515 TPR Domain Length = 727 Score = 30.7 bits (66), Expect = 1.0 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Frame = +3 Query: 234 GRCYRRHKCYEKAWEFSDHKSSRAQRH-WGNFLFDHK-----KYEECIPHYEKSVEINSI 395 G CY K ++ A + +R + + L H+ ++E+ Y K++ I++ Sbjct: 506 GNCYSLRKDHDTALKMFQRAIQLNERFTYAHTLCGHEFAALEEFEDAERCYRKALGIDTR 565 Query: 396 QESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500 + W LG L E +E + ++ +NP S Sbjct: 566 HYNAWYGLGMTYLRQEKFEFAQHQFQLALQINPRS 600 >At3g25060.1 68416.m03131 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats Length = 601 Score = 29.9 bits (64), Expect = 1.8 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Frame = +1 Query: 7 YLWASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQL-----WEDVIVCYTILQLRHK 171 YL+ +GLP + L D+Y +G ++ A + ++ W +I + L +K Sbjct: 242 YLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANK 301 Query: 172 AAEVIQQQIDTNPTVKLYCLLG 237 A E + + L L+G Sbjct: 302 AFEAVVEMQSLGFQPDLVTLVG 323 >At2g20000.1 68415.m02338 cell division cycle family protein / CDC family protein low similarity to SP|P30260|CC27_HUMAN Protein CDC27Hs (Cell division cycle protein 27 homolog) Homo sapiens; contains Pfam profile PF00515: TPR Domain Length = 744 Score = 29.9 bits (64), Expect = 1.8 Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Frame = +3 Query: 234 GRCYRRHKCYEKAWE-FSDHKSSRAQRHWGNFLFDHK-----KYEECIPHYEKSVEINSI 395 G CY K +E A + F + + + L H+ +E + Y+ ++ +++ Sbjct: 525 GNCYSLQKDHETALKNFLRAVQLNPRFAYAHTLCGHEYTTLEDFENGMKSYQNALRVDTR 584 Query: 396 QESVWLRLGYAALTTENWELSARAYRRYTYLNPNS 500 + W LG L E E S +R +NP+S Sbjct: 585 HYNAWYGLGMIYLRQEKLEFSEHHFRMAFLINPSS 619 >At2g42810.1 68415.m05300 serine/threonine protein phosphatase, putative similar to SP|P53042 Serine/threonine protein phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase T) (PPT) {Rattus norvegicus}; contains Pfam profiles PF00149: Ser/Thr protein phosphatase, PF00515: TPR Domain Length = 484 Score = 29.1 bits (62), Expect = 3.2 Identities = 16/58 (27%), Positives = 23/58 (39%) Frame = +3 Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEINSIQESVWLRLGYAALTTENW 449 E SD + + N F KY I Y K++E+NS W +A E + Sbjct: 6 ENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEY 63 >At1g18580.1 68414.m02317 glycosyltransferase family protein 8 contains Pfam profile PF01501: Glycosyl transferase family 8; protein sequence is truncated due to a frameshift. This could be a pseudogene or a sequencing error may exist. Length = 332 Score = 29.1 bits (62), Expect = 3.2 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 375 SVEINSIQESVWLRLGYAALTTENWELSARAY 470 ++EI S++E WL Y+ + + + ARAY Sbjct: 286 AIEIRSVEEFSWLNASYSPVVKQLLDTDARAY 317 >At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF03016 exostosin family, PF01535 PPR repeat Length = 1388 Score = 28.7 bits (61), Expect = 4.2 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 5/72 (6%) Frame = +2 Query: 410 VEIGLRSAYDRELGAVGESVPSI--HLPQP*LVRGWNNLAKVYVKQGDKYRAYRALMEAL 583 V L S YD++ G+ + V + +PQ V WN + VK+G ++A+ E Sbjct: 218 VSNSLMSLYDKDSGSSCDDVLKLFDEIPQRD-VASWNTVVSSLVKEGKSHKAFDLFYEMN 276 Query: 584 R---FNYDNWKL 610 R F D++ L Sbjct: 277 RVEGFGVDSFTL 288 >At1g62740.1 68414.m07081 stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI:872116; contains Pfam profile PF00515 TPR Domain Length = 571 Score = 28.7 bits (61), Expect = 4.2 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +3 Query: 276 EFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSVEIN 389 E+ D +R GN F +KY + + HY ++++ N Sbjct: 375 EYYDPNIGDEEREKGNDFFKEQKYPDAVRHYTEAIKRN 412 >At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase, putative similar to O-GlcNAc transferase, Homo sapiens [SP|O15294], Rattus norvegicus [SP|P56558]; contains Pfam profile PF00515: TPR Domain; identical to cDNA GI:18139886 Length = 977 Score = 28.3 bits (60), Expect = 5.5 Identities = 12/33 (36%), Positives = 20/33 (60%) Frame = +2 Query: 488 QP*LVRGWNNLAKVYVKQGDKYRAYRALMEALR 586 QP W+NLA ++++ GD RA + EA++ Sbjct: 219 QPTFAIAWSNLAGLFMESGDLNRALQYYKEAVK 251 >At3g01100.1 68416.m00015 early-responsive to dehydration protein-related / ERD protein-related low similarity to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 Length = 703 Score = 28.3 bits (60), Expect = 5.5 Identities = 16/61 (26%), Positives = 25/61 (40%) Frame = +3 Query: 201 HKSDSQAVLFAGRCYRRHKCYEKAWEFSDHKSSRAQRHWGNFLFDHKKYEECIPHYEKSV 380 H++D VL K Y+K SR + WG FL + + HY+K + Sbjct: 227 HRTDKLKVLMNDA----EKLYKKLTRVKSGSISRQKSRWGGFLGMFGNNVDVVDHYQKKL 282 Query: 381 E 383 + Sbjct: 283 D 283 >At1g71060.1 68414.m08201 pentatricopeptide (PPR) repeat-containing protein low similarity to CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat Length = 510 Score = 28.3 bits (60), Expect = 5.5 Identities = 17/69 (24%), Positives = 33/69 (47%) Frame = +1 Query: 19 SGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWEDVIVCYTILQLRHKAAEVIQQQI 198 + L ++ W Q++ D Y+++ ++ L+ D+I+ + I R K A + Q + Sbjct: 341 NALVGAYCWSQRMEDAYKTVDEMR--LKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM 398 Query: 199 DTNPTVKLY 225 PTV Y Sbjct: 399 SCEPTVSTY 407 >At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related contains weak similarity to Rho-GTPase-activating protein 1 (GTPase-activating protein rhoOGAP) (Rho-related small GTPase protein activator) (CDC42 GTPase-activating protein) (p50-rhoGAP) (Swiss-Prot:Q07960) [Homo sapiens] Length = 202 Score = 27.9 bits (59), Expect = 7.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 363 AVCILHTSCDRTENFPSGAVLGYFYD 286 AV +HT R+ENFP + L YD Sbjct: 68 AVLYVHTGVQRSENFPGISALRAIYD 93 >At1g06180.1 68414.m00650 myb family transcription factor identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana];contains PFAM profile:PF00249 Length = 246 Score = 27.9 bits (59), Expect = 7.3 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 2/108 (1%) Frame = +3 Query: 42 VAPAAGRPVPEPGAREGSTRGVSETTTLGRCYSLLHYTPTEA*GSRSYTTTD*HKSDSQA 221 V+ A P + S+ +S TTLG + + A S S+ Sbjct: 129 VSTTAAEMPTSPQQQSSSSADISAITTLGNNNDISNSNKDSATSSEDVLAIIDESFWSEV 188 Query: 222 VLFAGRCYRRHKCYEKA--WEFSDHKSSRAQRHWGNFLFDHKKYEECI 359 VL K +K WE S ++ + H F FDH CI Sbjct: 189 VLMDCDISGNEKNEKKIENWEGSLDRNDKGYNHDMEFWFDHLTSSSCI 236 >At4g35420.1 68417.m05031 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family similar to dihydroflavonol 4-reductase (Rosa hybrid cultivar, GI:1332411), CPRD14 protein (Vigna unguiculata, GI:1854445) Length = 326 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 16 ASGLPASWTWRQQLADLYQSLGLVKAALEEYQKLQLWE 129 ASG ASW ++ L + Y+ +G V+ E + LW+ Sbjct: 13 ASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWK 50 >At3g05790.1 68416.m00650 Lon protease, putative similar to Lon protease homolog 2 SP:P93655 Length = 942 Score = 27.5 bits (58), Expect = 9.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +3 Query: 336 HKKYEECIPHYEKSVEINSIQESV 407 HK+ E + +K VEIN IQES+ Sbjct: 287 HKRLELTLELVKKEVEINKIQESI 310 >At3g04830.2 68416.m00524 expressed protein Length = 299 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 124 WEDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCL 231 W ++ Y LQ+ +AA ++ I T PT+ LY L Sbjct: 165 WRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHL 200 >At3g04830.1 68416.m00523 expressed protein Length = 303 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +1 Query: 124 WEDVIVCYTILQLRHKAAEVIQQQIDTNPTVKLYCL 231 W ++ Y LQ+ +AA ++ I T PT+ LY L Sbjct: 169 WRELAEIYVSLQMYKQAAFCYEELILTQPTLPLYHL 204 >At1g22730.1 68414.m02840 MA3 domain-containing protein contains Pfam profile PF02847: MA3 domain; low similarity to programmed cell death 4 protein [Gallus gallus] GI:12958564 Length = 693 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/43 (30%), Positives = 26/43 (60%) Frame = +2 Query: 512 NNLAKVYVKQGDKYRAYRALMEALRFNYDNWKLWDNVIIVSMD 640 N+L K YV GDK A+R + + L+ + + ++ +I++M+ Sbjct: 260 NDLLKEYVMSGDKKEAFRCI-KGLKVPFFHHEIVKRALIMAME 301 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,279,548 Number of Sequences: 28952 Number of extensions: 345841 Number of successful extensions: 1148 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1073 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1148 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1594686376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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