Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30260
(758 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 179 5e-46
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 176 3e-45
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 151 8e-38
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 135 7e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 1e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 75 1e-14
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 64 3e-11
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 48 1e-06
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.95
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.9
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 2.9
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 27 3.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 26 5.1
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 26 5.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 5.1
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 6.7
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 8.9
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 8.9
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.9
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 179 bits (435), Expect = 5e-46
Identities = 98/168 (58%), Positives = 122/168 (72%), Gaps = 3/168 (1%)
Frame = +2
Query: 251 TNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 430
TNVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 431 LATNKRALRRLRTACERAKRTLSSSTKRALR*ILSLRVLTSTRQLLVLASRS*TPICSGL 610
+ N RA+RRLRTACERAKRTLSSS + ++ I SL + A +C+ L
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASIE-IDSLYEGIDFYTSITRARFE--ELCADL 307
Query: 611 PWSQWRSLSVMPRWIRL-KSTI--LYWWGGSTRIPKVQKLLQDFFNGK 745
+ + + R ++ KS++ + GGSTRIP++QKL+ DFFNGK
Sbjct: 308 FRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGK 355
Score = 132 bits (319), Expect = 5e-32
Identities = 64/83 (77%), Positives = 72/83 (86%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
E KTF PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct: 108 ETKTFTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNV 167
Query: 183 LRIINEPTAAAIAYGLDKKGTGE 251
LRIINEPTAAAIAYGLD+ E
Sbjct: 168 LRIINEPTAAAIAYGLDRSNQHE 190
Score = 102 bits (244), Expect = 6e-23
Identities = 48/60 (80%), Positives = 57/60 (95%)
Frame = +1
Query: 508 KASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 687
+ASIEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVG
Sbjct: 277 QASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVG 336
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 176 bits (428), Expect = 3e-45
Identities = 96/168 (57%), Positives = 121/168 (72%), Gaps = 3/168 (1%)
Frame = +2
Query: 251 TNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 430
+NVLIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD
Sbjct: 191 SNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKD 250
Query: 431 LATNKRALRRLRTACERAKRTLSSSTKRALR*ILSLRVLTSTRQLLVLASRS*TPICSGL 610
+ N RA+RRLRTACERAKRTLSSS + ++ I SL + +C+ L
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASIE-IDSL--FEGIDFYTSITRARFEELCADL 307
Query: 611 PWSQWRSLSVMPRWIRL-KSTI--LYWWGGSTRIPKVQKLLQDFFNGK 745
+ + R ++ K+++ + GGSTRIP+VQKL+ DFFNGK
Sbjct: 308 FRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGK 355
Score = 138 bits (335), Expect = 6e-34
Identities = 67/83 (80%), Positives = 73/83 (87%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
E KTF PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNV
Sbjct: 108 ETKTFTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNV 167
Query: 183 LRIINEPTAAAIAYGLDKKGTGE 251
LRIINEPTAAAIAYGLD+ GE
Sbjct: 168 LRIINEPTAAAIAYGLDRSNQGE 190
Score = 103 bits (246), Expect = 4e-23
Identities = 49/60 (81%), Positives = 56/60 (93%)
Frame = +1
Query: 508 KASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 687
+ASIEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVG
Sbjct: 277 QASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVG 336
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 151 bits (367), Expect = 8e-38
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 3/167 (1%)
Frame = +2
Query: 254 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 433
NVLIFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D+
Sbjct: 196 NVLIFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDI 255
Query: 434 ATNKRALRRLRTACERAKRTLSSSTKRALR-*ILSLRV-LTSTRQLLVLASRS*TPICSG 607
+ + RALRRLR+ACERAKR LSS T+ + LS + +S+ + T +
Sbjct: 256 SDDPRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKAT 315
Query: 608 L-PWSQWRSLSVMPRWIRLKSTILYWWGGSTRIPKVQKLLQDFFNGK 745
+ P ++ S +P+ + +L GGSTRIPKVQ+L+ DFF+G+
Sbjct: 316 IDPVAKVLKDSKVPK-ADVHDIVLV--GGSTRIPKVQRLVSDFFDGR 359
Score = 121 bits (292), Expect = 1e-28
Identities = 60/79 (75%), Positives = 67/79 (84%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
E K F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNV
Sbjct: 112 EKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNV 171
Query: 183 LRIINEPTAAAIAYGLDKK 239
LRIINEPTAAAIAYGLD K
Sbjct: 172 LRIINEPTAAAIAYGLDAK 190
Score = 83.4 bits (197), Expect = 3e-17
Identities = 38/68 (55%), Positives = 53/68 (77%)
Frame = +1
Query: 484 KEDLVIVHKASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQ 663
K L V + ++E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA
Sbjct: 273 KRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKAD 332
Query: 664 IHDIVLVG 687
+HDIVLVG
Sbjct: 333 VHDIVLVG 340
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 135 bits (326), Expect = 7e-33
Identities = 62/79 (78%), Positives = 73/79 (92%)
Frame = +3
Query: 9 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 188
K F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+R
Sbjct: 143 KKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIR 202
Query: 189 IINEPTAAAIAYGLDKKGT 245
I+NEPTAAAIAYGLDK T
Sbjct: 203 IVNEPTAAAIAYGLDKTDT 221
Score = 117 bits (282), Expect = 2e-27
Identities = 66/171 (38%), Positives = 109/171 (63%), Gaps = 4/171 (2%)
Frame = +2
Query: 254 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 433
+++++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+
Sbjct: 224 HIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDV 283
Query: 434 ATNKRALRRLRTACERAKRTLSSSTKRALR*ILSLRVLTSTRQLLVLASRS-*TPICSGL 610
+ +A+ +L+ E+AKRTLSS ++++R + + + + SR+ I L
Sbjct: 284 TKDLKAMGKLKREVEKAKRTLSS--QKSVR--IEIESFFNGQDFSETLSRAKFEEINMDL 339
Query: 611 PWSQWRSLSVMPRWIRLKST---ILYWWGGSTRIPKVQKLLQDFFNGKGAQ 754
+ + + + LK + + GGSTRIPKVQ+LL+ FF K ++
Sbjct: 340 FKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFFGKKASK 390
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/80 (43%), Positives = 52/80 (65%)
Frame = +1
Query: 478 EGKEDLVIVHKASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDK 657
+ K L IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K
Sbjct: 299 KAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKK 358
Query: 658 AQIHDIVLVGWLHSYPQGAE 717
++I DIVLVG P+ E
Sbjct: 359 SEIDDIVLVGGSTRIPKVQE 378
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 1e-29
Identities = 55/77 (71%), Positives = 67/77 (87%)
Frame = +3
Query: 9 KTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLR 188
KT+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR
Sbjct: 156 KTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLR 215
Query: 189 IINEPTAAAIAYGLDKK 239
++NEPTAAA+AYGLDKK
Sbjct: 216 VVNEPTAAALAYGLDKK 232
Score = 105 bits (253), Expect = 5e-24
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +2
Query: 257 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLA 436
V +FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+
Sbjct: 237 VAVFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLS 296
Query: 437 TNKRALRRLRTACERAKRTLSSSTK 511
++ A++R+R A E+AK LSS +K
Sbjct: 297 KDRLAVQRIREAAEKAKCELSSLSK 321
Score = 45.6 bits (103), Expect = 8e-06
Identities = 19/52 (36%), Positives = 37/52 (71%)
Frame = +1
Query: 562 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGWLHSYPQGAE 717
I+RA+FE+L L R T++P +++L+DA + ++I++++LVG + P+ E
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVE 394
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 74.5 bits (175), Expect = 1e-14
Identities = 36/88 (40%), Positives = 51/88 (57%)
Frame = +2
Query: 257 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLA 436
V I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+
Sbjct: 201 VAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVL 260
Query: 437 TNKRALRRLRTACERAKRTLSSSTKRAL 520
+N +A RL TA ER K+ LS++ L
Sbjct: 261 SNPKATFRLATAVERLKKVLSANANAPL 288
Score = 67.3 bits (157), Expect = 2e-12
Identities = 33/78 (42%), Positives = 51/78 (65%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
E+ F ++ + TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN
Sbjct: 112 EETAFSNIQLIAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNP 171
Query: 183 LRIINEPTAAAIAYGLDK 236
LR++N+ AAA+ YG+ K
Sbjct: 172 LRLMNDNAAAALTYGITK 189
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +1
Query: 511 ASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGW 690
A + ++ + ID + I R+ FEEL L P+EK+L A + K ++ I +VG
Sbjct: 286 APLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGG 345
Query: 691 LHSYPQGAEAPARF 732
P E A +
Sbjct: 346 CTRVPIVKEVIANY 359
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/84 (34%), Positives = 51/84 (60%)
Frame = +2
Query: 257 VLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLA 436
V++ + G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D
Sbjct: 219 VVVANFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPR 278
Query: 437 TNKRALRRLRTACERAKRTLSSST 508
N R+L +LR CE KR LS+ T
Sbjct: 279 KNARSLAKLRAQCEITKRVLSNGT 302
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/73 (38%), Positives = 45/73 (61%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
++K E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL V
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPV 193
Query: 183 LRIINEPTAAAIA 221
L++I++P A +A
Sbjct: 194 LQLIHDPAAVILA 206
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/66 (30%), Positives = 37/66 (56%)
Frame = +1
Query: 511 ASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGW 690
AS +DSL +GIDF++SI R R++ + + V +++ A M+ I +++L G
Sbjct: 304 ASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGG 363
Query: 691 LHSYPQ 708
+ P+
Sbjct: 364 ASNTPK 369
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 48.4 bits (110), Expect = 1e-06
Identities = 27/103 (26%), Positives = 52/103 (50%)
Frame = +3
Query: 3 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNV 182
+++ + EE+ +M + AE + + + V+TVP +FN+ QR +A I +V
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHV 190
Query: 183 LRIINEPTAAAIAYGLDKKGTGERMYLSLTSAAVPSTCPSLPS 311
L +I++ A AI Y L + + + Y + + ST ++ S
Sbjct: 191 LALIDDNVAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVIS 233
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +1
Query: 508 KASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 687
+A I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L G
Sbjct: 313 EAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFG 372
Query: 688 WLHSYP 705
P
Sbjct: 373 GASRIP 378
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.95
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 375 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 265
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 744 FPLKKSCRSFCTLGIRVEPPHQYNIVDLSLIHLGITERL 628
FP+KK +L I +EPP I L LI G+ + L
Sbjct: 187 FPVKKIINGNVSLSINMEPPKDKKIASLFLI--GVEDEL 223
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -1
Query: 692 SHPTSTISWI*ALSILASRRDFSTGSMVDLNRSAFSSSKRARVIDV*KSIPSKRESISML 513
S PTS+ S I + S S FS+ + + S+FSS+ + ++ S S S
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
Query: 512 ALWTMTRSSLPSH 474
A + SSL SH
Sbjct: 394 ASSSSHSSSLSSH 406
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 2.9
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Frame = +3
Query: 150 KDAGTISGLNVLRIINEPT-----AAAIAYGLDKKGTGERMYLSLTSAAVPSTCPSLPSR 314
K+ G + G +L +N PT AA +GL + T RM ++L A+ T SL
Sbjct: 309 KNLGYVKGKALL--MNMPTSSISFAALTLFGLIPEFTNRRMDIALVGLAINLTSGSL--- 363
Query: 315 MVSSR*NPPPATPTWEVRTLTIAWSTTLS---RSSRGNTKRTSLPTRELLGVCVLHVRG 482
+ ++ W I + LS +S G+TK+ + ++G CV ++ G
Sbjct: 364 IAFAKPTHAQLAGYWLFGISPIPYICILSCISSNSAGHTKKVFMSAVSMIGYCVGNMVG 422
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 400 PGVQEEIQKGPRYQQES--S*AFAYCM*EGKEDLVIVHKASI 519
PGV + I+ R E AF Y GK ++ +VHKA+I
Sbjct: 175 PGVVQSIKLITRAASERVIRYAFQYARQTGKNNITVVHKATI 216
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 670 RGFEPYPSWHHGETSPLAP 614
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 411 LNSWTKWLTMRLSKSSPPKWVSPAVDF 331
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = -2
Query: 592 RSAPRSEHE*LTCRSQYPQRENLSQCSLCGR*QGPLCPLTC 470
R+ S +E L +YP R N CS C LC TC
Sbjct: 241 RAEDISSNELLPTPEEYPYRYNNDYCSACHGPGNFLCCETC 281
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = +2
Query: 596 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWWGGSTRIPKVQKLLQDFFN 739
ICS LP + W + S PR+ R S ++ WW + V + Q N
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWSTTAWTTFVASITQSTAN 184
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.1
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Frame = +3
Query: 120 YFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKG--TGERMYLSLTSAAVPST 293
Y+ ++ R+ + + +++ + + P ++ + D K G + S TS+ V ST
Sbjct: 107 YYQEALRKKSWSRSLSNNISLSQSSSSPATSSFS---DPKAFSAGVPKFTSDTSSTVSST 163
Query: 294 CPSLPSRMVSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRT 431
PSL + +S PP+TP T W+ T+ S+ G + +T
Sbjct: 164 -PSLNHSLQNSM---PPSTP-----TPPPVWAPTIVSSALGTSSKT 200
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 529 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 687
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = +1
Query: 505 HKASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLV 684
HK + L G+ +RF +L L P++ + D K+ ++D + V
Sbjct: 582 HKKELNASELLVGLLTMVDFPSSRFPKLLELLHEFLNNPLQSNSTDFKLSLVNVYDCIAV 641
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 30 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 152
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 279 AVPSTCPSLPSRMVSSR*NPPPATPTW 359
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,559
Number of Sequences: 5004
Number of extensions: 71898
Number of successful extensions: 286
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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