Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30260
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.44 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.58 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +3

Query: 135 QRQATKDAGTISGLNVLRIINEPTAAAIAYG--LDKKGTGERMY-LSLTSAAVPSTCPSL 305
           Q +A K A  +   N   II+EPT     YG  +   G+   +Y ++ TS    ST  +L
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTL 412

Query: 306 PSRMVSSR*NP 338
             ++   R +P
Sbjct: 413 RPQVSPDRTSP 423


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 279 AVPSTCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 443
           A  S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 74  AFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 WRTNVLIFDLGGGTFDVSILT 307
           WR ++++++   G F+V++ T
Sbjct: 111 WRPDIVLYNNADGNFEVTLAT 131


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +2

Query: 245 WRTNVLIFDLGGGTFDVSILT 307
           WR ++++++   G F+V++ T
Sbjct: 107 WRPDIVLYNNADGNFEVTLAT 127


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 365 HLPSGCRRRWISPRRYHP 312
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,933
Number of Sequences: 438
Number of extensions: 5096
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)