Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30259
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672... 31 0.79
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 30 1.8
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 30 2.4
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 30 2.4
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 7.3
11_06_0679 - 26227654-26227770,26234067-26236217 28 7.3
09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523... 28 7.3
09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544 28 7.3
05_06_0137 + 25936516-25936606,25936716-25937268,25937436-259379... 28 7.3
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 28 9.7
02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752 28 9.7
>03_02_0803 +
11365959-11366390,11366470-11366502,11367158-11367214,
11367784-11367945,11367987-11368139,11368218-11368295,
11368377-11368469,11368981-11369071,11369091-11369209
Length = 405
Score = 31.5 bits (68), Expect = 0.79
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 338 VRPFSRLVKLFVASRVCHSCSLYPSSRRLFI 246
++PF L V ++CH C+LYP+++ L +
Sbjct: 202 LKPFKVCFILLVMEKMCHVCNLYPNNKVLLL 232
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 386 EKELFCNGKPDCKDESDENACTVELDPNRAP 478
+++L C+G D KD S+ AC +D N P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 29.9 bits (64), Expect = 2.4
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -2
Query: 561 FGSIPPG-IRVPSAEQKQSXRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFS 385
FGS G PSA S T G S FGS+ST AF S+ G P ++ F
Sbjct: 79 FGSTSTGAFGQPSAPAFGSMSTGAFGQPSAPAFGSTST-GAFGQPSTQAFGTP-SSSPFG 136
Query: 384 MQSPLPQANLPSGQIG--SSVFKIGKT 310
+P A+ P+ G SS F G+T
Sbjct: 137 SSTPAFGAS-PAPVFGATSSTFGSGQT 162
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -2
Query: 498 HWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKI 319
H + G + ST SS S +S L + +S + LP+ +LP G + S V I
Sbjct: 1045 HQAITNHGEMHQEPSTCPQCSSGSLRKSLLSREGHSMDTEIILPEIDLPVGMVDSFVHDI 1104
Query: 318 G 316
G
Sbjct: 1105 G 1105
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 7.3
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
Frame = -2
Query: 558 GSIPPGIRVP--SAEQKQSXRTHWLGSQSGALFGSSST-VQAFSSDSSLQSGLPL---QN 397
G PPG+R+P + +QS H S L GS S +Q LQ G L Q
Sbjct: 282 GQQPPGMRIPQGQVQPQQSPGFHQPAQVSQVLQGSQSQGLQMPPQQGQLQHGFHLTTPQG 341
Query: 396 NSFSMQSPLPQ-ANLPSGQIGSSVFKIGKT--FRGFSSLSQLFTLPFQSQ 256
PQ + +P GQ SS K+ +T G F+LP Q
Sbjct: 342 KQPHHGHVGPQLSQVPLGQ-QSSTLKVDETGVTGGLDGKQTGFSLPLSQQ 390
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.3 bits (60), Expect = 7.3
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Frame = -2
Query: 534 VPSAEQKQSXRTHWLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSM-QSPLPQAN 358
+P A +KQS + G G S ++A + ++ P Q + S Q P+ N
Sbjct: 83 IPGAREKQSDQAK--GDAQGENKEGES-IKATQAQDLPRTQAPNQVQNLSQAQIPILTQN 139
Query: 357 LPSGQIGSSVFKIGKTFRGFSSLSQLFTLPFQSQVVYQDRKPIQT 223
P QI + +T S +Q+ P Q+ + +Q PIQT
Sbjct: 140 TPQAQITIPTQNLAQTL--IPSQNQI---PIQTHISFQPHIPIQT 179
>09_04_0426 -
17451731-17451886,17451974-17452079,17452289-17452387,
17452782-17452888,17452985-17453230,17454187-17454461,
17454834-17454886,17455163-17455455
Length = 444
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 383 IEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDPNQCVLXDCFCSADGTRIPGGIEP 559
I E+ N +C+ SD AC+ +D + + DP C + DG P I P
Sbjct: 232 ISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFFPSRIVP 291
Query: 560 NQVP 571
P
Sbjct: 292 GYDP 295
>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
Length = 165
Score = 28.3 bits (60), Expect = 7.3
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Frame = -1
Query: 616 CQHFTAPLKCNSNHLRYLIWFNSTW------DTCTVSRTETVG*DALVRITVRRSIWV-Q 458
C F PL + +I+F S+W ++C ++ R V W +
Sbjct: 54 CMCFGKPLAPGGSRAWSIIYFASSWVTFMIAESCLIAGATKNAYHTRYRHMVYVGSWTCE 113
Query: 457 FDSAGIFI-GFIFAVWFTITEQFFFNAISAATSQFTFRTNR 338
G+FI G +F V+ I +F+ + +TSQ + N+
Sbjct: 114 SLRKGVFIAGAVFVVFTMILNVYFYMYYTKSTSQAAKKINK 154
>05_06_0137 +
25936516-25936606,25936716-25937268,25937436-25937932,
25938030-25938090,25938411-25938482,25938563-25938634,
25938730-25938810,25938918-25939081,25939174-25939442,
25939531-25939657,25939778-25939846,25939944-25940136,
25940232-25940733
Length = 916
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -2
Query: 522 EQKQSXRTHWLGS---QSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQSPLPQANLP 352
++K + +W+G SG L G S+ AF++ +LQ+ L L NN+ + P + LP
Sbjct: 388 KEKYQVKKNWMGDPNLSSGGLSGEISS--AFANLKALQN-LDLSNNNLTGSIPDALSQLP 444
Query: 351 S 349
S
Sbjct: 445 S 445
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +3
Query: 288 TNSRSHEKFYQS*KRTNLFVLKVNWLVAAEIALKKNCSVMVNQTAKMNPMKMPALSNWTQ 467
T SR H+ Y S TNL +L+ + + K+ +VM K N P T+
Sbjct: 417 TPSRCHDDTYNSTNSTNLHILEKS--ITTNNKQKQQPAVMCIDILKKNHPPEPTKDKTTE 474
Query: 468 IERLTVILTSA 500
+++ ++ +S+
Sbjct: 475 LQKNILVRSSS 485
>02_01_0200 + 1344755-1345115,1346229-1346366,1346505-1346752
Length = 248
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 559 WFNSTWDTCTVSRTETVG*DALVRITVRRSIWVQ 458
W N TWD + V DA++ RR W++
Sbjct: 96 WVNGTWDLRQFEKGGAVDWDAVIDAEARRRKWLE 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,142,948
Number of Sequences: 37544
Number of extensions: 452788
Number of successful extensions: 1181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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