Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30259
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 50 3e-06
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 48 9e-06
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 48 1e-05
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 48 1e-05
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 48 1e-05
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 47 2e-05
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 47 2e-05
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 47 2e-05
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 46 3e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 8e-05
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 43 2e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 42 4e-04
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 42 4e-04
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 42 4e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 42 6e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 42 6e-04
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 41 0.001
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 40 0.002
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 38 0.007
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.012
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 37 0.021
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.028
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 36 0.028
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 36 0.028
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 35 0.065
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.065
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 35 0.086
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.086
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.11
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 34 0.15
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 34 0.15
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.8
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 29 3.2
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.2
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_26396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4) 28 7.5
SB_29483| Best HMM Match : TerC (HMM E-Value=0.92) 28 7.5
SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024) 28 9.9
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 49.6 bits (113), Expect = 3e-06
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +2
Query: 473 APDCDPNQCVLXDCFCSADGTRIPGGIEPNQVPQMVTITF 592
A C P+ C L +CFCS G +PGG+ P ++PQM+ +TF
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTF 603
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 49.2 bits (112), Expect = 4e-06
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C K AC SG+CI+ C+G DCKD SDE+ C + + C CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 524 A-----DGTRIPG 547
DGT PG
Sbjct: 1214 GKKDCEDGTDEPG 1226
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 314 LPILKTDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCD 487
LP+ CP+ + C +G C+ ++L C+G C D SDE C L A C+
Sbjct: 1107 LPVHSVPGFRCPDKSTQFQCVNGQCVSRDLICDGDNACLDFSDEANCKC-LSSKFA--CE 1163
Query: 488 PNQCVLXDCFCSADGT 535
+C+ D DGT
Sbjct: 1164 SGECI--DVVGLCDGT 1177
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/68 (33%), Positives = 28/68 (41%)
Frame = +2
Query: 326 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVL 505
KT C G+ CG+G CI C+ DC D SDEN C CD +C+
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCIS 241
Query: 506 XDCFCSAD 529
C D
Sbjct: 242 SKWRCDHD 249
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C +G CI + C+ DC D SDE C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 47.6 bits (108), Expect = 1e-05
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C +G CI +E C+ + DC D SDE C PN C C+ C
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCD 2516
Query: 524 AD 529
D
Sbjct: 2517 GD 2518
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C G +C +G CI + C+ + DC D SDE C P C +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCD 2268
Query: 524 AD 529
+
Sbjct: 2269 GE 2270
Score = 46.4 bits (105), Expect = 3e-05
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 502
CP K C +G CI K C+G+ DC D SDE + C+ + DP C +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +2
Query: 257 CDWKGKVNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESD 436
C ++ +V CD ++ R C + C SG CI ++ C+G DC D SD
Sbjct: 3019 CVYRSRV--CDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGDNDCGDSSD 3076
Query: 437 ENA--CTVELDPNRAPDCDPNQCVLXDCFCSAD 529
E A C V +A +C+ + C +
Sbjct: 3077 EKAGECHVTCPAGQARCATGRRCIPSEWRCDGE 3109
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 502
C +G+ +C G CI + C+G DC D SDE P R C + CV
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENA 445
C + AC SG C+ K C+G DC D SDE++
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESS 2201
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 335 EPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLXD 511
E CP + C +G C+ + C+G+ DC D SDE C P + N C+
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 512 CFC 520
C
Sbjct: 2305 WLC 2307
Score = 41.9 bits (94), Expect = 6e-04
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENA--CT 451
CP G+ C +G CI E C+G+ DC+D SDEN+ CT
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 341 IC-PEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
IC P+ + C +G CI K+ C+G DC D SDE+ C
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTC 122
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +2
Query: 338 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 442
P C GK C +G CI C+G+ DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 344 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLXDCF 517
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 518 C 520
C
Sbjct: 1147 C 1147
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
CP C SG CI C+G DC D SDE C
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDC 2530
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/62 (29%), Positives = 25/62 (40%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C C + C+ + C+G DC+D SDE C V C +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 524 AD 529
D
Sbjct: 3067 GD 3068
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 278 NNC-DKLEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDE 439
N+C DK ++P + C + AC +G CI L C+G DC D SDE
Sbjct: 2351 NDCTDKSDEPTDC----QRSNATCTGAQFACDNGRCISTRLLCDGDNDCGDNSDE 2401
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 502
C + + C SG CI C+ DC D SDE C + CD C+
Sbjct: 3168 CAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 37.1 bits (82), Expect = 0.016
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDPNQCV 502
CP+ C + C+++ C+ DC D SDE C + N CD N+C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 36.7 bits (81), Expect = 0.021
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = +2
Query: 323 LKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQ 496
L+ C G++ CGS + CI C+G DC D DE E N + C +
Sbjct: 2280 LRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGE 2339
Query: 497 CVLXDCFCSADGTRIPGGIEP 559
CV C D EP
Sbjct: 2340 CVPASWRCDGDNDCTDKSDEP 2360
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP---DCDPNQCVLXDC 514
C + C SG+C+ C+G DC D+SDE + CD +C+
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCISTRL 2387
Query: 515 FCSAD 529
C D
Sbjct: 2388 LCDGD 2392
Score = 36.3 bits (80), Expect = 0.028
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C C +G C ++ C+G DC D SDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 34.7 bits (76), Expect = 0.086
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFC 520
C + C + CI K C+G+ DC D SDE P C +QC + C
Sbjct: 1127 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE-----------GPGCGLDQCHSNNGGC 1175
Query: 521 SADGTRIPGGIEPNQVPQMVTITF*RCCEMLTTSIYMNQIFQR 649
+ +P G++ + P + + CE + + + QR
Sbjct: 1176 AQLCMDVPEGVQCSCRPGFTLASDNKTCEDINECLNSSSCSQR 1218
Score = 34.7 bits (76), Expect = 0.086
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +2
Query: 380 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFC 520
CI + C+G+ DC D SDE C + C +C+ C
Sbjct: 3141 CIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDPNQCV 502
C C + CI + C+G+ DC D SDE ++C V + P D +C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +2
Query: 329 TDEPICPEGKLA-----C-GSGDCIEKELFCNGKPDCKDESDENACTVELD 463
+DE C EG C G+ CI C+G DC D DE + ++LD
Sbjct: 117 SDESTCGEGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLD 167
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 341 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDE 439
IC C + CI K C+G C D+SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 344 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 451
C + C S CI C+ DC D SDE CT
Sbjct: 1047 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 1083
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDEN 442
C + + +C S C+ C+G+ DC D SDE+
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDES 2447
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + + C + C+ C+ DC D SDE C
Sbjct: 3330 CRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Frame = +2
Query: 341 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLXDC 514
+C G C CI C+G P C DE+ C +V CD +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNCGSVNQCAPYHFRCDNFRCVYRSR 3024
Query: 515 FC 520
C
Sbjct: 3025 VC 3026
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 338 PICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDPNQCVLXD 511
P C G+ CG G+C+ + L CNG+ DC+D SDE C + + AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 34.7 bits (76), Expect = 0.086
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 341 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 448
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/35 (51%), Positives = 20/35 (57%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
CP K C G CI++ CNGK DC D SDE C
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGC 38
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 344 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFC 520
C C S G CI K C+G+ DC D SDE C ++ +C+ NQCV C
Sbjct: 90 CGSRHFKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKC 148
Query: 521 SADGTRIPGGIE 556
+ PGG +
Sbjct: 149 DGEKDCRPGGFD 160
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Query: 524 ADGTRIPGGIEP 559
G EP
Sbjct: 132 GVSDCQDGSDEP 143
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C +G C+ +E+ C+G C D SDE C + PD +CV FC+
Sbjct: 38 CHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 524 ADGTRIPGGIE 556
+ G E
Sbjct: 95 GESDCTDGSDE 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 362 ACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 502
AC G C+ L CNG DC+D SDE + D R P P C+
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPPW-PRPCI 162
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/72 (31%), Positives = 28/72 (38%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C G C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Query: 524 ADGTRIPGGIEP 559
G EP
Sbjct: 132 GVSDCQDGSDEP 143
Score = 41.5 bits (93), Expect = 7e-04
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C +G C+ +EL C+G C D SDE C + PD +CV FC+
Sbjct: 38 CHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCN 94
Query: 524 ADGTRIPGGIE 556
+ G E
Sbjct: 95 GESDCTDGSDE 105
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFC 520
C G+ C +G CI K L+C+G C D SDE C P+ C +C++ C
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
Score = 43.6 bits (98), Expect = 2e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
CP C SG+CI C+GK DC D +DE C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 44.8 bits (101), Expect = 8e-05
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 472
C + C +G CI+ C+G DC+D SDE C + L P R
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDPNQCVLXDCF 517
CP C + C+ C+G+ DC D SDE+ C T N CD +C+
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFR 401
Query: 518 CSAD 529
C +
Sbjct: 402 CDRE 405
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 323 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQC 499
L T + P C +G C+ KE C+G DC D SDE+ C P R P C P+
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSSDEDNC-----PTRPPYTCPPSDF 348
Query: 500 VLXDCFCSADGTRIPG 547
+ C + R G
Sbjct: 349 TCANSQCVPNSFRCDG 364
Score = 36.3 bits (80), Expect = 0.028
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 329 TDEPI-CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 502
T P+ C + + C G+ C+ + C+G+ DC D SDE C + C +C+
Sbjct: 464 TPPPVKCRKNERMCADGNGCVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCI 523
Query: 503 LXDCFCSADGT 535
C DGT
Sbjct: 524 PLPQKC--DGT 532
Score = 34.7 bits (76), Expect = 0.086
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C G CI C+ + DC D SDE C
Sbjct: 383 CSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +2
Query: 344 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDPNQCVLXD 511
C + C SG CI C+ + DC D SDE C P P C N+ + D
Sbjct: 422 CAPYEFTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCAD 479
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Frame = +2
Query: 341 ICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 448
+CP CGS CI C+ P C DE C
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNC 607
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPD 481
C + C + CI C+G +C D SDE C P + PD
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVPPQ-PD 554
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C E ++ CG+G C+ K C+ DC D +DE C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 524 AD 529
D
Sbjct: 727 GD 728
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C +G+CI K C+G+ DC ++SDEN C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +2
Query: 347 PEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLXDCFCS 523
P+ + C +G CI + C+ DC D SDE N+C C CV+ C
Sbjct: 628 PDTQFRCTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCD 687
Query: 524 ADGTRIPGGIEPNQVP 571
D G E N P
Sbjct: 688 QDDDCGDGTDELNCAP 703
Score = 36.7 bits (81), Expect = 0.021
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 341 ICPEGKLACGSG-DCIEKELFCNGKPDCKDESDE--NACTVELDPNRAP 478
IC +G+ CGS CI + C+G DC + +DE N E N P
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGP 836
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +2
Query: 380 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDPNQCVLXDCFCSADGTRIPGGIE 556
CI C+G+ DC D SDE C +P+ C +C+ C D G E
Sbjct: 599 CIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKDDDCHDGSDE 658
Query: 557 PNQVPQM 577
N M
Sbjct: 659 RNSCATM 665
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLXDC 514
C + C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +2
Query: 317 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDPN 493
P++ C + C +G+C+ K CNG D C D SDE+ CT L + C
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSG 706
Query: 494 QCVLXDCFC 520
+C+ FC
Sbjct: 707 ECIEVATFC 715
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 329 TDEPICPEG--KLACGSGDCIEKELFCNGKPDCKDESDENAC 448
+DE C G + C SG+CIE FC+GK DC D DE C
Sbjct: 689 SDESGCTCGLHEFQCSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C E + C +G C+++ L C+G C D SDE C+ P+ C +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Score = 42.7 bits (96), Expect = 3e-04
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
CP C SG+CI CN + DC D +DE C
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNC 253
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNR 472
C C SG+CI +L C+ DC D SDE C V+ DP R
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDPNQCVLXDCFC 520
CP + C +G CI C+G DC D SDE +C+ + C +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 521 SADGTRIPGGIEPN 562
D G E N
Sbjct: 70 DRDNDCGDGSDERN 83
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
C G+ +C +G CI + C+ DC D SDE C+
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNCS 85
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 466
C + +C +G C+ L C+G DC D SDE +C P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 34.7 bits (76), Expect = 0.086
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAP 478
C + C + C+ C+G+ DC D SDE C+ P P
Sbjct: 149 CHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Frame = +2
Query: 344 CPEGKLAC---GSGDCIEKELFCNGKPDCKDESDE 439
CP + C SG CI CNG+ DC D DE
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPDAWDE 226
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
C G+ C S +CI L C+G DC D SDE CT
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSSDEINCT 58
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 329 TDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENAC 448
T +C + C GDCI C+G DC+ +DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 338 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
P+C G+ C G CI+ C+ DC D SDEN C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 41.5 bits (93), Expect = 7e-04
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 317 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
P T P C G+ C +G CI C+ K DC D SDE C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 338 PICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
P CP G C G CI + L C+ + DC D DE +C
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASC 2280
Score = 37.5 bits (83), Expect = 0.012
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 353 GKLACGSGDCIEKELFCNGKPDCKDESDENACTV 454
G + C +G CI+K C+ DC D SDE C +
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 36.3 bits (80), Expect = 0.028
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 341 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
+C + C G C + C+ DC D SDE +C+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDC--KDESDENAC 448
C + C G CI K C+ + DC D SDE+ C
Sbjct: 4059 CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESKC 4095
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
C + C SG CI C+ + DC D S+E T
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERNST 2818
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 CPEGKLACGS-GDCIEKELFCNGKPDCKDESDENAC 448
C + C + G CI C+ DC D SDE +C
Sbjct: 3425 CNAQQFGCVTDGKCIPLTSVCDFNVDCLDGSDERSC 3460
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 41.9 bits (94), Expect = 6e-04
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 356 KLACGSGDCIEKELFCNGKPDCKDESDENACTVELDP 466
+L C +G C +K +C+G+ DC D SDE C+ +P
Sbjct: 228 QLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANP 264
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.9 bits (94), Expect = 6e-04
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +2
Query: 329 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 484
+DE CP ++ C S C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 448
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENACTVE---LDPNRAPDCDPNQCVLXD 511
C + C D CI C+G+ DC D DE C + P+ P P C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGCATTAPVITPSLGPP-HPGDCNFEK 396
Query: 512 CFC 520
C
Sbjct: 397 DMC 399
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 344 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDEN 442
C ++ C SG C++++ C+ DC D +DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 41.1 bits (92), Expect = 0.001
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 439
C E + C SGDC+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 344 CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DPNQCVLXDCF 517
C + AC +G CI+++ C+G+ DC D SDE C +E N C + ++C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 518 C 520
C
Sbjct: 174 C 174
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +2
Query: 344 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACT 451
C + C S CI C+ DC D SDE CT
Sbjct: 74 CHSTEFQCETSSRCIPLRFVCDADDDCGDRSDERNCT 110
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDE 439
C + C + CI K C+G+ DC D SDE
Sbjct: 154 CGNDRWRCSNTSRCIAKSQVCDGRVDCPDASDE 186
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C G C +G CI L C+ DC DESDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 341 ICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDP 490
+C + + CG S CI K C+GK DC DE C P P P
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPLKP 92
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN-QCVLXDCFC 520
C + C +G CI + C+ + DC D SDE C+ ++ + C + +C+ C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
Query: 521 SADGTRIPGGIEPNQV-PQ 574
G E N V PQ
Sbjct: 64 DGKSDCSGGEDEKNCVKPQ 82
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 281 NCDKLEKPRKVLPILKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 448
NC K + P P+ +P C + C +G C+++ C+G DC D SDE C
Sbjct: 77 NCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCADGSDERGC 129
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2
Query: 380 CIEKELFCNGKPDCKDESDENACTVELDPNR 472
CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 332 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 442
D P C SG CI + C+GK DC D SDE+
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDES 391
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 332 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCV 502
D P C E + C +G CI+ + C+ +C D SDE C +PN C+ +C+
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGCAT-CEPNFF-RCNTGKCI 1396
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 344 CPEGKLACGS--GDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCF 517
C ++C S CI K C+G DC D+SDE C N+ CD QC+ D
Sbjct: 1307 CKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPR 1364
Query: 518 C 520
C
Sbjct: 1365 C 1365
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C C +G CI C+ DC D SDE C
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGC 1417
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C + C++++ CN K DC D SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 38.3 bits (85), Expect = 0.007
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +2
Query: 323 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVE 457
L + E C K C + CI+ CN + DC+D SDE +C E
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 467 NRAPDCDPNQCVLXDCFCSADGTRIPGGIEPNQVPQMVTITF 592
N A CD +C +C CS D + PGG+ P PQ++ ITF
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITF 65
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 37.9 bits (84), Expect = 0.009
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 329 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDESDENACTVE 457
+DE CP ++ C S C+ + L C+GKPDC D SDE C E
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
Score = 37.5 bits (83), Expect = 0.012
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 CPEGKLAC-GSGDCIEKELFCNGKPDCKDESDENAC 448
C + + C S CI+ C+G PDC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 37.5 bits (83), Expect = 0.012
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDE 439
C + C +G+CI K C+G+ DC ++SDE
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDE 623
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPN--QCVLXDC 514
C + C CI C+G DC D SDE C PN + C + QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
C + C +G+CI + C+ DC D SDE AC+
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACS 169
Score = 35.9 bits (79), Expect = 0.037
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 341 ICPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
+C + K C +G C+ + C+G DC+D +DE C
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRDGTDEVGC 131
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C G+ C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/65 (33%), Positives = 28/65 (43%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCS 523
C + C SG CI C+G +C D SDE+ C + N C +CV C
Sbjct: 209 CAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGC--KCFTNEL-TCSSGRCVQSINLC- 264
Query: 524 ADGTR 538
DG R
Sbjct: 265 -DGVR 268
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C +L C SG C++ C+G DC+ DE C
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRC 279
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 36.3 bits (80), Expect = 0.028
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 281 NCDKLEKPRKVLPILKTDEPICPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 454
N +E+ + +L T + C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 68 NSKAIEEAKNILQE-STVKGGCAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 125
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 448
C + C +G CI + C+ DC D+ DE C
Sbjct: 23 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 58
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 275 VNNCDKLEKPRKVLPILKTDEPI-CPEGKLACGSG-DCIEKELFCNGKPDCKDESDENAC 448
V++CD K PI + DE C K C +G C+ C+ DC D DE+ C
Sbjct: 924 VHDCDD-GSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHNC 982
Score = 35.9 bits (79), Expect = 0.037
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 344 CPEGKLACG-SGDCIEKELFCNGKPDCKDESDENACTV 454
C EG+ AC + C+ K C+ DC D SDE C +
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 344 CPEGKLACGSGD-CIEKELFCNGKPDCKDESDENAC 448
C + C +G CI + C+ DC D+ DE C
Sbjct: 836 CAADRYRCDNGKKCIPLKWICDSVADCDDKRDERNC 871
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 35.9 bits (79), Expect = 0.037
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
CP + C + C+ + C+G DC D SDE C
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKNC 55
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDEN 442
C + CG+ CI + C+G DC D SDE+
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRSDES 97
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/54 (29%), Positives = 19/54 (35%)
Frame = +2
Query: 401 CNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCSADGTRIPGGIEPN 562
C+G DC D DE P +C+ CV C D G E N
Sbjct: 2 CDGTVDCPDALDE-IVNCSRCPRHEFECENKLCVPRTWLCDGDNDCHDGSDEKN 54
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 341 ICPEGKLACGSG-----DCIEKELFCNGKPDCKDES-DENAC 448
+CP G CG+G CI K L CNG DC DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 35.1 bits (77), Expect = 0.065
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 484
C +L C SG C+ C+G DC+ DE C + P + +C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRCGSSVCPLNSLNC 276
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C SG CI C+ +C D SDE+ C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 228
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 34.7 bits (76), Expect = 0.086
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 365 CGSGDCIEKELFCNGKPDCKDESDENACT 451
C +G+CI + C+ DC D SDE AC+
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACS 35
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C G+ C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 34.7 bits (76), Expect = 0.086
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C +L C SG C+ C+G DC+ + DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C SG CI C+ +C D SDE+ C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 265
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C G+ C + CI + C+ DC D SDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVE----LDPNRAPDCDPNQCVLXD 511
C + C +G C+ + C+ DC D SDE C R CD ++C+ +
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRY-RCDNDRCIPRN 176
Query: 512 CFCSAD 529
C D
Sbjct: 177 WVCDRD 182
Score = 33.5 bits (73), Expect = 0.20
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 365 CGSGDCIEKELFCNGKPDCKDESDENAC 448
C +G I + C+G+ DC+D SDE C
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGC 115
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C SG CI C+ +C D SDE+ C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGC 1138
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C +L C SG C+ C+G DC+ DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 320 ILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDESDENACTVEL-DPNRAPDCDPNQ 496
+ + D +C +G+ C G+C + +C+ +D + CTV +P + C P +
Sbjct: 521 VYQPDNTVCDKGRRVCSVGECAKSICTKYALEECQCTADNDLCTVCCKEPGKDDTCTPTR 580
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 33.9 bits (74), Expect = 0.15
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 347 PEGKLACGSGDCIEKELFCNGKPDCKDESDENACT 451
P+ C +G CI C+ + DC D SDE C+
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEMNCS 42
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 338 PICPEGKLACGS-GDCIEKELFCNGKPDCKDESDE 439
P C G+ C S G CI + C+G DC+D DE
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDE 243
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C + C SG CI C+ +C D SDE+ C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGC 309
Score = 33.1 bits (72), Expect = 0.26
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 344 CPEGKLACGSGDCIEKELFCNGKPDCKDESDENAC 448
C +L C SG C+ C+G DC+ DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 33.1 bits (72), Expect = 0.26
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 530 GTRIPGGIEPNQVPQMVTITF 592
G +P G++P Q+PQM+ +TF
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTF 1573
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +2
Query: 278 NNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNG-----KPDCKDESDEN 442
NNCD KP + +LK + P+CP+ +GD + L C G + DC S
Sbjct: 141 NNCDTARKPTQ---LLKCELPVCPQ----WNAGDWGQCSLTCGGGVQTRRIDC--SSSLT 191
Query: 443 ACTVELDPNRAPDCDPNQC 499
C P + C+ C
Sbjct: 192 KCDHRKKPVESRRCNTEAC 210
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 365 CGSGDCIEKELFCNGKPDCKDESDENAC 448
C + + I+ + C+G DC D SDE+ C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 365 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC--DPNQCVLXDCFCSAD 529
CG+G E+ C G +C +++ C V+ P PDC D + L D S D
Sbjct: 2010 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDCSHDLDLTFLLDASGSVD 2067
>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1680
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 365 CGSGDCIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDC--DPNQCVLXDCFCSAD 529
CG+G E+ C G +C +++ C V+ P PDC D + L D S D
Sbjct: 16 CGAGGKRERSRTCQGGSNCPGSANQVEMCDVQRCPLICPDCSHDLDLTFLLDASGSVD 73
>SB_26396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 586 NSNHLRYLIWFNSTWDTCTVSRTETVG*DALVRITV 479
NSNH+ Y + + + W TC + G +ITV
Sbjct: 9 NSNHVTYRLPYKAEWGTCAKRSRDLSGWQIQAKITV 44
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.1 bits (62), Expect = 4.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 425 DESDENACTVELDPNRAPDCDPNQCV 502
D+ D+ C +P++ PD D ++CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 278 NNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCI 385
NNCD L+KP+ + L+TDE + + C S C+
Sbjct: 200 NNCDGLDKPKDLK--LRTDEDLLWILTIKCCSNKCM 233
>SB_35778| Best HMM Match : Dickkopf_N (HMM E-Value=2.4)
Length = 178
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 359 LACGSGDCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDPNQCVLXDCFCSAD 529
+ CGS + + C DC E D C E D DC ++ D C++D
Sbjct: 2 IRCGSDEDCASDEDCASDEDCASEED---CASEEDCGSDDDCASDEDCASDEDCASD 55
>SB_29483| Best HMM Match : TerC (HMM E-Value=0.92)
Length = 586
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = -3
Query: 485 HSQALYLGPVRQCRHFHRIHLCSLVYHYRTILFQCNLRCHKPIYLQDK*VRPFSRLVKLF 306
H QALYL P ++ ++ +C Y+Y T+L + L+ ++ QD + S + L
Sbjct: 405 HGQALYLQPRKKLLRLWKLFIC---YNYLTLLAKVCLQVVACVW-QDYVTQYTSNCLPLQ 460
Query: 305 VASRVCHSCSLY 270
+ S C S Y
Sbjct: 461 LLSMFCLRNSTY 472
>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
Length = 474
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 278 NNCDKLEKPRKVLPILKTDEPICPEGKLACGSGDCI 385
NNCD EKP+ + L+TDE + + C S C+
Sbjct: 248 NNCDGFEKPKDLK--LRTDEDLLWILTIKCCSNKCM 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,767,497
Number of Sequences: 59808
Number of extensions: 559618
Number of successful extensions: 1890
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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