Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30259
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    32   0.38 
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    32   0.50 
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom...    29   4.6  

>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/55 (43%), Positives = 27/55 (49%)
 Frame = -2

Query: 438 SSDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFSSLSQLFT 274
           SSDSSL       NNS S  SPLP +  P  +I SS    G  F G S  S  F+
Sbjct: 18  SSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSST---GTRFSGHSESSHNFS 67


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
 Frame = -2

Query: 558 GSIPPGIRVPSAEQKQSXRTHWLGSQSGALFGSSSTVQAFSSDSSL--QSGLPLQNNSFS 385
           GS  PG    S     S  T   G+ S  LFGSSS+    +S +     SG    NN+FS
Sbjct: 190 GSSTPGFGASSTPAFGSTNTPAFGASSTPLFGSSSSPAFGASPAPAFGSSGNAFGNNTFS 249

Query: 384 MQSPLPQANLPS-GQIGSSVF 325
                  ++ P+ G   +S F
Sbjct: 250 SGGAFGSSSTPTFGASNTSAF 270


>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
           domain-containing protein weak similarity to hepatocyte
           growth factor-regulated tyrosine kinase substrate HRS
           isoform 2 [Homo sapiens] GI:9022389; contains Pfam
           profiles PF00790: VHS domain, PF03127: GAT domain
          Length = 671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 495 WLGSQSGALFGSSSTVQAFSSDSSLQSGLPLQ-NNSFSMQSPLPQANLPSGQIGSSV 328
           W  + + A +   +   A  +D+S  +G  LQ +NSF  ++  PQA   +   G SV
Sbjct: 561 WASTSANAYYTPRANASASYTDTSALAGRSLQQSNSFPTRAGDPQATSTASNSGVSV 617


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,609
Number of Sequences: 28952
Number of extensions: 370920
Number of successful extensions: 1014
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)