Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30258
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    66   2e-13
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.73 
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   9.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   9.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 66.5 bits (155), Expect = 2e-13
 Identities = 32/42 (76%), Positives = 35/42 (83%)
 Frame = +1

Query: 499 VPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHEAFPRS 624
           VP  R +ETGVLK G +VVFAPANITTEVKSVEMHHEA P +
Sbjct: 13  VPVGR-VETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEA 53



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +3

Query: 468 LQDVYQIGGIGTVP 509
           LQDVY+IGGIGTVP
Sbjct: 1   LQDVYKIGGIGTVP 14


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 579 SSDVGGGKDNNGTXFQHTSF 520
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 7   QRFHQEHDHRNLS 45
           + FH+EHD R  S
Sbjct: 260 RHFHEEHDTRRAS 272


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +3

Query: 555 LCPRQHHY*SQICGDAPRSFSKKLYLGDNVGFQTL 659
           +C R H     +C    R F   + +G  + F T+
Sbjct: 515 ICIRSHDKLCDVCDSVNRIFGFIIIIGCLIQFNTI 549


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,593
Number of Sequences: 336
Number of extensions: 3730
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)