Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30258
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   1e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              92   3e-19
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 77   1e-14
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              32   0.36 
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.9  
SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)                    28   7.8  
SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/88 (48%), Positives = 64/88 (72%)
 Frame = +2

Query: 2   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
           GH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK L++ VN
Sbjct: 231 GHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVILVN 290

Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTRRL 265
           KMD     ++E R+EEIK +++ + +++
Sbjct: 291 KMDDPTVKWNEERYEEIKVKLTPFLKKV 318


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 42/63 (66%), Positives = 50/63 (79%)
 Frame = +2

Query: 2   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
           GH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L  +LGV QLIV +N
Sbjct: 22  GHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQLIVAIN 81

Query: 182 KMD 190
           K+D
Sbjct: 82  KLD 84


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 45/106 (42%), Positives = 57/106 (53%), Gaps = 8/106 (7%)
 Frame = +1

Query: 319 NMLEPSTKMPWFKGWQVER------KERQADGKCXXXXXXXXXXXXXXXTSPCVFPCKTY 480
           NM+  +++MPWFK W +ER      KE  A G                   P   P +  
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 481 TK--SVVLVPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHEA 612
            K   +  VP  R +ETGVLK GT+V F+P+NITTEVKSVEMHHE+
Sbjct: 113 YKIGGIGTVPVGR-VETGVLKPGTVVTFSPSNITTEVKSVEMHHES 157



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +2

Query: 2  GHRDFIKNMITGTSQ 46
          GHRDFIKNMITGTSQ
Sbjct: 46 GHRDFIKNMITGTSQ 60


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +2

Query: 2   GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
           GH   +  M+ G +  D A+L++A              QT EH      + +K +++  N
Sbjct: 73  GHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHILILQN 126

Query: 182 KMDSTEPPYSEPRFEEIKKEV 244
           K+D  +   ++ ++++I K V
Sbjct: 127 KIDLVKESQAKDQYDQILKFV 147


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 307 WHGDNMLEPSTKMPWFKGWQVERKER 384
           +H DN    +   PWF+ W  +++ER
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRER 216


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 255  VYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 103
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 102  IPASNSPVPAAT 67
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_19066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -1

Query: 280 QLGCSQSSCV*GYFLLDFLKSGLTVWWFSGIHFVY-SYDELFDTEGESEQG 131
           QL C++   +  YFL++  K  L  WW S    V+     L   EG+ E G
Sbjct: 43  QLLCTEKETISHYFLVNEHKRQLWRWWISAGQSVWLPVSRLTGKEGDPEIG 93


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 62  LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 238
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 239 EVSS 250
              S
Sbjct: 425 RTVS 428


>SB_5331| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 503

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 427 GWHRELQ*GISRQLAFLYAPPAI--P*TKAFWLKAPTCCLRAIQKWARKRQQLG 272
           GW   ++  +S    F+  P A   P   +FW   P+C  +  ++  RKR+Q G
Sbjct: 159 GWQNSIRHNLSLNRYFVKVPRAQDEPGKGSFWRIDPSCEQKLAEQAFRKRRQRG 212


>SB_3976| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 570 VGGGKDNNGTXFQHTSFNLPTARYQYHRFGI 478
           V  G DNN T   +   +LP  R ++ ++GI
Sbjct: 42  VSNGNDNNDTSMPNQKASLPIKRLRFGKYGI 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,743,796
Number of Sequences: 59808
Number of extensions: 503686
Number of successful extensions: 1496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)