Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30258
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 140 1e-33
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 140 1e-33
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 140 1e-33
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 140 1e-33
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 93 1e-19
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 87 7e-18
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 58 5e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 55 4e-08
At1g30900.1 68414.m03780 vacuolar sorting receptor, putative sim... 33 0.17
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 31 0.52
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 31 0.52
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 31 0.68
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 30 1.6
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 30 1.6
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 29 2.1
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 29 2.8
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 28 6.4
At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase fa... 28 6.4
At4g01910.1 68417.m00251 DC1 domain-containing protein contains ... 27 8.4
At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containi... 27 8.4
At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containi... 27 8.4
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 140 bits (338), Expect = 1e-33
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCN 153
Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTRRL 265
KMD+T P YS+ R++EI KEVSSY +++
Sbjct: 154 KMDATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKERQADGKCXXXXXXXXXXX 435
KK+GYNP + FVPISG+ GDNM+E ST + W+KG + Q +
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN------------EP 226
Query: 436 XXXXTSPCVFPCKTYTK--SVVLVPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHE 609
P P + K + VP R +ETG++K G +V FAP +TTEVKSVEMHHE
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVGR-VETGMIKPGMVVTFAPTGLTTEVKSVEMHHE 285
Query: 610 A 612
+
Sbjct: 286 S 286
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 438 RPTDKPLRLSLQDVYQIGGIGTVP 509
RP+DKPLRL LQDVY+IGGIGTVP
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVP 251
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 1e-33
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCN 153
Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTRRL 265
KMD+T P YS+ R++EI KEVSSY +++
Sbjct: 154 KMDATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKERQADGKCXXXXXXXXXXX 435
KK+GYNP + FVPISG+ GDNM+E ST + W+KG + Q +
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN------------EP 226
Query: 436 XXXXTSPCVFPCKTYTK--SVVLVPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHE 609
P P + K + VP R +ETG++K G +V FAP +TTEVKSVEMHHE
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVGR-VETGMIKPGMVVTFAPTGLTTEVKSVEMHHE 285
Query: 610 A 612
+
Sbjct: 286 S 286
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 438 RPTDKPLRLSLQDVYQIGGIGTVP 509
RP+DKPLRL LQDVY+IGGIGTVP
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVP 251
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 1e-33
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCN 153
Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTRRL 265
KMD+T P YS+ R++EI KEVSSY +++
Sbjct: 154 KMDATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKERQADGKCXXXXXXXXXXX 435
KK+GYNP + FVPISG+ GDNM+E ST + W+KG + Q +
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN------------EP 226
Query: 436 XXXXTSPCVFPCKTYTK--SVVLVPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHE 609
P P + K + VP R +ETG++K G +V FAP +TTEVKSVEMHHE
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVGR-VETGMIKPGMVVTFAPTGLTTEVKSVEMHHE 285
Query: 610 A 612
+
Sbjct: 286 S 286
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 438 RPTDKPLRLSLQDVYQIGGIGTVP 509
RP+DKPLRL LQDVY+IGGIGTVP
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVP 251
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 140 bits (338), Expect = 1e-33
Identities = 66/88 (75%), Positives = 77/88 (87%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I N
Sbjct: 94 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCN 153
Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTRRL 265
KMD+T P YS+ R++EI KEVSSY +++
Sbjct: 154 KMDATTPKYSKARYDEIIKEVSSYLKKV 181
Score = 86.6 bits (205), Expect = 1e-17
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +1
Query: 256 KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKERQADGKCXXXXXXXXXXX 435
KK+GYNP + FVPISG+ GDNM+E ST + W+KG + Q +
Sbjct: 179 KKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN------------EP 226
Query: 436 XXXXTSPCVFPCKTYTK--SVVLVPCRRQIETGVLKXGTIVVFAPANITTEVKSVEMHHE 609
P P + K + VP R +ETG++K G +V FAP +TTEVKSVEMHHE
Sbjct: 227 KRPSDKPLRLPLQDVYKIGGIGTVPVGR-VETGMIKPGMVVTFAPTGLTTEVKSVEMHHE 285
Query: 610 A 612
+
Sbjct: 286 S 286
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +3
Query: 438 RPTDKPLRLSLQDVYQIGGIGTVP 509
RP+DKPLRL LQDVY+IGGIGTVP
Sbjct: 228 RPSDKPLRLPLQDVYKIGGIGTVP 251
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 93.5 bits (222), Expect = 1e-19
Identities = 42/86 (48%), Positives = 61/86 (70%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH+ ++ NMI+G SQAD VL+++A GEFE G + GQTREH LA TLGV +LIV VN
Sbjct: 188 GHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLIVVVN 247
Query: 182 KMDSTEPPYSEPRFEEIKKEVSSYTR 259
KMD +S+ R++EI++++ + +
Sbjct: 248 KMDDPTVNWSKERYDEIEQKMVPFLK 273
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 87.4 bits (207), Expect = 7e-18
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLAFTLGVKQLIVGV 178
GH+DF+ NMI G +QAD A+L++ A G FEAG GQTREHA + GV+Q+IV +
Sbjct: 326 GHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVLRGFGVEQVIVAI 385
Query: 179 NKMDSTEPPYSEPRFEEIKKEVSSY 253
NKMD YS+ RF+ IK+ V S+
Sbjct: 386 NKMDIV--GYSKERFDLIKQHVGSF 408
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 58.0 bits (134), Expect = 5e-09
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH D++KNMITG +Q D A+L+V+ G QT+EH LLA +GV ++V +N
Sbjct: 151 GHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLAKQVGVPDMVVFLN 203
Query: 182 KMDSTEPPYSEPRFE-EIKKEVSSY 253
K D + E E+++ +SSY
Sbjct: 204 KEDQVDDAELLELVELEVRELLSSY 228
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 426 PATARPTDKPLRLSLQDVYQIGGIGTV 506
P R T+ P L+++DV+ I G GTV
Sbjct: 278 PIPQRQTELPFLLAVEDVFSITGRGTV 304
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/68 (41%), Positives = 40/68 (58%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH D++KNMITG +Q D +L+V+ G QT+EH LLA +GV L+ +N
Sbjct: 139 GHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLN 191
Query: 182 KMDSTEPP 205
K+D + P
Sbjct: 192 KVDVVDDP 199
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 426 PATARPTDKPLRLSLQDVYQIGGIGTV 506
P R DKP + ++DV+ I G GTV
Sbjct: 258 PDPVRVLDKPFLMPIEDVFSIQGRGTV 284
>At1g30900.1 68414.m03780 vacuolar sorting receptor, putative
similar to BP-80 vacuolar sorting receptor [Pisum
sativum] GI:1737222
Length = 631
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Frame = +2
Query: 293 CPFLDGTE------TTCWSLQP-KCLGSRDGRWSVKKGKLTGNASLKLSMPSCHCPP 442
CP ++G + T+C P +C ++ G WS K LT +A L C CPP
Sbjct: 446 CPVVNGVQYKGDGYTSCEPYGPARCSINQGGCWSETKKGLTFSACSNLETSGCRCPP 502
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH + M+ G + D A+L++AA QT EH + +K +I+ N
Sbjct: 136 GHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQN 189
Query: 182 KMDSTEPPYSEPRFEEIKKEVSS 250
K+D + + E I+K +++
Sbjct: 190 KIDLINEKAATEQHEAIQKFITN 212
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH + M+ G + D A+L++AA QT EH + +K +I+ N
Sbjct: 136 GHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQN 189
Query: 182 KMDSTEPPYSEPRFEEIKKEVSS 250
K+D + + E I+K +++
Sbjct: 190 KIDLINEKAATEQHEAIQKFITN 212
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH + M+ G + D A+LI+AA QT EH + +K +I+ N
Sbjct: 128 GHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHLKDIIIIQN 181
Query: 182 KMDSTEPPYSEPRFEEIKKEVSS 250
K+D + + + E+I++ +++
Sbjct: 182 KIDLIQENEAIKQHEDIQRFITN 204
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGV 178
GH D+ + T Q +C + L+V TG F +KNG R+ LG + +
Sbjct: 230 GHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELENLST 289
Query: 179 NKMDSTEPPYSEPRFE-EIKKEV 244
+DS E E R E + KEV
Sbjct: 290 FTLDSDEE--DEVREESNVAKEV 310
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +2
Query: 2 GHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVN 181
GH + M+ G + D A+L++AA QT EH + +K +I+ N
Sbjct: 130 GHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQLKHIIILQN 183
Query: 182 KMDSTEPPYSEPRFEEIKK 238
K+D + + + E I+K
Sbjct: 184 KIDLIQENVAINQHEAIQK 202
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 426 PATARPTDKPLRLSLQDVYQIGGIGTVPSAN*NWCV 533
P T KPL++ D+ I GI VP +W V
Sbjct: 252 PVTGENLGKPLKIPPDDLINIAGISQVPDGEASWHV 287
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 252 TQEDWLQPSCCRFRAHFWMARRQHVGAFNQNALVQGM 362
T DW+ C AHF RR +GAF A G+
Sbjct: 684 TAGDWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGL 720
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 638 VSKVQLLGKASWCISTDLTSVVMLAGAKTTMVPXFNTPVSICRRH 504
+S+ + + C+S LT V ML+ A+TT++P + P R+H
Sbjct: 432 LSRTLIEANETGCLSQALTVVAMLS-AETTLLPARSKPSEKKRKH 475
>At1g26130.1 68414.m03190 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0, SP|O43520], Mus musculus [SP|P98200,
SP|P70704], {Bos taurus} SP|Q29449; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1184
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 92 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 250
E+G +TR+H G++ LI+ ++D E R E K VS+
Sbjct: 629 ESGRKYEKETRDHVNEYADAGLRTLILAYRELDENEYEVFTERISEAKNSVSA 681
>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 528 CVEXRYHCCLCPRQHHY*SQIC 593
C R+HC LC R+ +Y S C
Sbjct: 73 CSNLRFHCDLCGRRTNYLSYYC 94
>At3g16760.2 68416.m02140 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 456
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 503 GTNTTDLVYVLQGKTQGLVSGAGSG 429
G+ T +V + GKT G SG+GSG
Sbjct: 74 GSGPTSMVGDIHGKTWGSASGSGSG 98
>At3g16760.1 68416.m02139 tetratricopeptide repeat (TPR)-containing
protein low similarity to TPR-containing protein
involved in spermatogenesis TPIS [Mus musculus]
GI:6272682; contains Pfam profile PF00515:
tetratricopeptide repeat (TPR) domain
Length = 475
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 503 GTNTTDLVYVLQGKTQGLVSGAGSG 429
G+ T +V + GKT G SG+GSG
Sbjct: 74 GSGPTSMVGDIHGKTWGSASGSGSG 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,080
Number of Sequences: 28952
Number of extensions: 352762
Number of successful extensions: 1117
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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